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1.A.6.2.7
Ion channel of 686 aas and 2 TMSs, one at the N-terminus and one at the C-terminus.  The N-terminal half of this protein is cycsteine-rich and shows similarity with 9.B.87.1.12, while the C-terminal half shows extensive similarity with 1.A.6.2 proteins.

Accession Number:PDM81116.1
Protein Name:PDM81116.1 ion channel [Pristionchus pacificus]
Length:687
Molecular Weight:
Species:Pristionchus pacificus [54126]
Number of TMSs:2
Substrate

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MIYTTIFISL IAVNSASAYK AVVHPTFPPV GCQNYGVCAS GITVTPYYNC TTCKCNAGYG 
61:	GDDCETVVPF DVCASNPCSG IKSVCLPHGT GKYECICPLG AIGADCSLNS CGTTNPCWNG 
121:	GRCLTLTADV FKCICPAGLG GFYCELGNPC AGVNCGRGWC QVMDPQTHFC VCPPDGTYGR 
181:	LCMMAPMCMS YFADITCYCH YGWSGPTCYT PLWPMVCDNV NCSGNGECVF VPGKTAYTCN 
241:	CNYGWTGANC ETQTYCGKEG SWWCKNGGDC VDNPDGTYYC NCLSNYYEER CRGYDVCQAT 
301:	TCSGRGTCSQ VLQPDVMVMQ CTCNNWFAGL DCSDDSPQKL VDAYGVENYL KIKDLVSNKY 
361:	TNNANFLTSL PFMVMQVEPA VRETLGYQIN EFMIHVEFEG KPLVATEVFE FFMDNSLGNC 
421:	YTFGSSNINY TFDLRSTGFE SGLRVRVGST VNESLAWDEK SAVTIFVHES TKMINAESIN 
481:	YNPIPGYLTR MVVREESYTR LRMGSMFSMA CARSVKDVDN FYSTGAYTIE ACFRSCYQDM 
541:	SMKMCGCMDP RYTMPANATK CALDKFDCCE SIIPIKGDPS TWKSCFCPQA CDERQFSVVM 
601:	TSSSIGDDCD KFADNDTCIS NLMESDIEVV LSDSSHIMYI ENPALPFTKV VVNLGGYGGL 
661:	LCAFCSIVLC ELITLLWILC TGGCRK