TCDB is operated by the Saier Lab Bioinformatics Group
TCIDNameDomainKingdom/PhylumProtein(s)
1.C.39.1.1









Uncharacterized MACPF homologue of 1153 aas

Eukaryota
Evosea
UP of Dictyostelium fasciculatum (Slime mold)
1.C.39.1.2









Uncharacterized protein of 1277 aas

Eukaryota
Evosea
UP of Polysphondylium pallidum (Cellular slime mold)
1.C.39.1.3









Uncharacterized protein of 1216 aas

Eukaryota
Evosea
UP of Acytostelium subglobosum
1.C.39.1.4









Uncharacterized protein of 1151 aas

Eukaryota
Evosea
UP of Polysphondylium pallidum
1.C.39.2.1









Perforin 1 precursor; targets viruses, bacteria and cancer cells (McCormack et al. 2013). It is produced by cytotoxic T lymphocytes and natural killer cells and has been expressed, purified and studied in insect cells (Naneh et al. 2015).

Eukaryota
Metazoa, Chordata
Perforin of Rattus norvegicus
1.C.39.2.2









Uncharacterized protein of 429 aas

Eukaryota
Metazoa, Chordata
UP of Astyanax mexicanus (Blind cave fish) (Astyanax fasciatus mexicanus)
1.C.39.2.3









Performin 1-like protein of 545 aas, Prf1

Eukaryota
Metazoa, Chordata
Prf1 of Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
1.C.39.2.4









Uncharacterized protein of 481 aas

Eukaryota
Metazoa, Chordata
UP of Latimeria chalumnae (West Indian ocean coelacanth)
1.C.39.2.5









Performin 1, Pfn1, of 587 aa

Eukaryota
Metazoa, Chordata
Pfn1 of Carassius auratus langsdorfii (Japanese silver crucian carp)
1.C.39.2.6









MACPF domain-containing protein (342aas)

Eukaryota
Ciliophora
MACPF proteins of Tetrahymena thermophila (Q23MJ4)
1.C.39.2.7









Duplicated MACPF protein (681aas) The first half resembles 1.C.39.6.2 more than the second half.

Eukaryota
Ciliophora
MACPF protein of Tetrahymena thermophila (Q23I78)
1.C.39.2.8









Perforin 1, PRF1 of 555 aas.  Plays a key role in secretory granule-dependent cell death and in defense against virus-infected and neoplastic cells. Plays an important role in killing other cells that are recognized as non-self by the immune system, e.g. in transplant rejection or some forms of autoimmune disease. Can insert into the membrane of target cells in its calcium-bound form, oligomerize and form large pores (Law et al. 2010). Promotes cytolysis and apoptosis of target cells by facilitating the uptake of cytotoxic granzymes. Perforin gene mutations contribute to hereditary cancer predisposition (Chaudhry et al. 2016). After perforin is secreted by CD8+ cytotoxic T-lymphocytes (CTLs) and disrupts the membranes of extracellular vesicles (EVs), adenosine is released from the EVs and acts as an immunosuppressive metabolite by binding to the adenosine receptor on the CTL membrane. This mechanism provides a novel survival strategy using cancer cell-derived EVs (Tadokoro et al. 2020).

Eukaryota
Metazoa, Chordata
Perforin of Homo sapiens
1.C.39.2.9









Two component cytolysin, perivitellin-2, one subunit (P0C8G6) is a 67 KDa subunit, and the other (P0DQP0) is a 31 kDa (286 aas) submit. The egg defensive protein, perivitellin-2, is thus a pore-forming two-subunit glycoprotein that affects both the nervous and digestive systems of mammals (Heras et al. 2008). It is a source of both structural and energetic molecules during embryonic development. The tachylectin subunit (31 kDa) binds target membranes while the MACPF subunit (67 kDa) disrupts lipid bilayers forming large pores altering the plasma membrance conductance (Dreon et al. 2013).

Eukaryota
Metazoa, Mollusca
2-protein Cytotoxin of Pomacea canaliculata (Golden apple snail)
1.C.39.3.1









Pore-forming, membrane attack, complement component 8, α-polypeptide precursor; C8α-MACPF (structure solved to 2.5 Å resolution; Hadders et al., 2007; Rosado et al., 2007).  β-Hairpins in C8α and C9 play a direct role in MAC membrane penetration and pore formation (Weiland et al. 2014). The first TMS of complement component-9 inhibits its own self assembly (Spicer et al. 2018).

Eukaryota
Metazoa, Chordata
C8α-MACPF of Homo sapiens (2QQH_A) (P07357)
1.C.39.3.2









Complement component 7

Eukaryota
Metazoa, Chordata
Complement component 7 of Xenopus laevis (Q6INM0)
1.C.39.3.3









Complement component C6 of 934 aas and 1 TMS; targets phagocytic and some non phagocytic cells (McCormack et al. 2013).  Expressed constitutively in phagocytes and inducibly in parenchymal tissue-forming cells. It is a transmembrane protein of cytosolic vesicles, derived from multiple organelles that translocate to and fuse with bacterium-containing vesicles. Subsequently, perforin-2 polymerizes and forms large clusters of 100 Å pores in the bacterial surface with perforin-2 cleavage products present in the bacteria. Perforin-2 is also required for the bactericidal activity of reactive oxygen and nitrogen species as well as hydrolytic enzymes (McCormack et al. 2015). Perforin-2 exists in membrane-bound (P2a) and secretory (P2b) isoforms, both present in human macrophages. P2a promotes fusion of vesicles with lysosomes, and may therefore play important roles in immune defense (Xiong et al. 2017). Loss of MPEG1 causes increased susceptibility to microbial infection. MPEG1 expression is upregulated in response to proinflammatory signals such as tumor necrosis factor alpha (TNFα) and lipopolysaccharides (LPS). Furthermore, germline mutations in MPEG1 have been identified in connection with recurrent pulmonary mycobacterial infections. Structural studies on MPEG1 revealed that it can form oligomeric pre-pores and pores. The unusual domain arrangement within the MPEG1 architecture suggests a novel mechanism of pore formation that may have evolved to guard against unwanted lysis of host cells (Bayly-Jones et al. 2020).

Eukaryota
Metazoa, Chordata
Complement component C of Homo sapiens
1.C.39.3.4









MACPF protein, terminal complement component, TCC-like of 585 aas.

Eukaryota
Metazoa, Chordata
TCC-like protein of Halocynthia roretzi (Sea squirt) (Cynthia roretzi)
1.C.39.3.5









Complement protein C9; targets bacteria (McCormack et al. 2013).  β-Hairpins in C8α and C9 play a direct role in MAC membrane penetration and pore formation (Weiland et al. 2014).

Eukaryota
Metazoa, Chordata
C9 of Equus caballus
1.C.39.3.6









Complement protein C9.  β-Hairpins in C8α and C9 play a direct role in MAC membrane penetration and pore formation (Weiland et al. 2014).

Eukaryota
Metazoa, Chordata
C9 of Fugu rubripes
1.C.39.4.1









Chain A, MACPF perforin-like protein, Plu-MACPF (structure solved to 2.0 Å resolution; Rosado et al., 2007).

Bacteria
Pseudomonadota
Plu-MACPF of Photorhabdus luminescens (2QP2_A) (Q7N6X0)
1.C.39.4.2









MACPF protein (453 aas) 

Bacteria
Cyanobacteriota
MACPF protein of Trichodesmium erythraeum (Q117U3)
1.C.39.4.3









Hypothetical Protein (588 aas)

Bacteria
Pseudomonadota
HP of Marinomonas sp. MED121 (A3YG19)
1.C.39.4.4









Putative perforin of 409 aas

Archaea
Euryarchaeota
Putative perforin of Halorubrum kocurii
1.C.39.4.5









Uncharacterized protein of 684 aas

Eukaryota
Viridiplantae, Streptophyta
UP of Selaginella moellendorffii
1.C.39.4.6









Uncharacterized protein of 1085 aas. This protein is a fusion protein with an N-terminal MACPF domain (see TC subfamily # 1.C.39..4) and a C-terminal internalin-A domain (see TC# 8.A.43.1.12).

Bacteria
Mycoplasmatota
UP of Acholeplasma palmae
1.C.39.4.7









Gram-negative insecticidal protein, GNIP1Aa of 536 aas and 0 TMSs/  Its structure has been determined to 2.5 Å resolution (PDB# 6FBM) (Zaitseva et al. 2019). It consists of two structurally distinct domains, a MACPF domain and a previously uncharacterized type of domain. GNIP1Aa is unique in being a prokaryotic MACPF member to have both its structure and function identified. It is specifically toxic to Diabrotica virgifera virgifera larvae upon feeding. The MACPF domain is probably important for oligomerization and transmembrane pore formation, while the accompanying domain may define the specificity of the target of toxicity. In GNIP1Aa the accompanying C-terminal domain has a unique fold composed of three pseudosymmetric subdomains with shared sequence similarity, a feature not obvious from the initial sequence examination. This domain is in a family named beta-tripod. Important regions in the beta-tripod domain, which may be involved in target recognition, have been identified (Zaitseva et al. 2019).

 

Bacteria
Pseudomonadota
GNIP1 of Chromobacterium piscinae
1.C.39.4.8









Uncharacterized phosphodiesterase of 771 aas and 0 TMSs. Only a segment of this protein is homologous to other members of family 1.C.39, and this segment is also distantly related to members of family 1.C.43.

Bacteria
Cyanobacteriota
UP of Scytonema sp. NIES-4073
1.C.39.4.9









Phosphodiesterase/alkaline phosphatase D, PhoD, of 837 aas and 0 TMSs. Except for the protein with TC# 1.C.39.4.8, only a segment of this protein is homologous to other members of the MACPF family, Iit is also related to members of family 1.C.43.

Bacteria
Cyanobacteriota
PhoD of Calothrix brevissima
1.C.39.5.1









MACPF homologue

Eukaryota
Metazoa, Chordata
MACPF homologue of Branchiostoma floridae (C3YI39)
1.C.39.5.2









MACPF homologue

Eukaryota
Metazoa, Cnidaria
MACPF homologue of Nematostella vectensis (A7RF41)
1.C.39.5.3









MACPF homologue

Eukaryota
Metazoa, Chordata
MACPF homologue of Branchiostoma floridae (C3Z435)
1.C.39.5.4









Protein of 1305 aas with an N-terminal MACPF domain and C-terminal extracellular cystine-rich furin-like (Fu-sup), fucolectin (tocylectin; discoidin; FTP; a fucose-binding lectin) and cystine-rich scavenger receptor (SRCR; extracellular protein-protein interaction) domains (in this order, N- to C-terminus).

Eukaryota
Metazoa, Chordata
MACPF protein of Branchiostoma floridae (Florida lancelet) (Amphioxus)
1.C.39.5.5









Cholesterol-dependent cytolysin of 632 aas

Bacteria
Pseudomonadota
UP of Pseudomonas thivervalensis
1.C.39.6.1









Sporozoite protein with MAC/Perforin domain (Homologous to Erylysin B) of 810 aas.  Interacts and breaches host cell membranes (Tavares et al. 2014).  CDC/MACPF proteins contain a characteristic four-stranded beta-sheet that is flanked by two alpha-helical bundles, which unfold to form two transmembrane beta-hairpins. Apicomplexan parasites express CDC/MACPFs termed perforin-like proteins (PLPs). Wade and Tweten 2015 present insights into the assembly and regulation of the Apicomplexan CDC (ApiMACPF) molecular pore-forming mechanisms, necessary for osmotically driven rupture of the parasitophorous vacuole and host cell membrane, and cell traversal by these parasites.

Eukaryota
Apicomplexa
MACPF protein of Plasmodium knowlesi (B3L016)
1.C.39.6.2









Perforin-like protein, PLP1, of 1150 aas (Tavares et al. 2014).

Eukaryota
Apicomplexa
PLP1 of Toxoplasma gondii
1.C.39.6.3









MACPF protein 

Eukaryota
Apicomplexa
MACPF protein of Theileria parva (Q4MYP3)
1.C.39.6.4









MACPF domain-containing protein (420aas)

Eukaryota
Apicomplexa
MACPF protein of Babesia bovis (A7AT97)
1.C.39.6.5









Perforin-like protein 4 of 654 aas and 1 N-terminal TMS. 

Eukaryota
Apicomplexa
Perforin homolog of Plasmodium falciparum
1.C.39.6.6









Perforin-like protein 5 of 676 aas and 1 N-terminal TMS.

Eukaryota
Apicomplexa
Perforin 5 of Plasmodium falciparum
1.C.39.6.7









Perforin-like protein 1 of 842 aas and possibly 2 TMSs, one N-terminal and the second at residue 250.  There are at least 3 perforin homologs in P. falciparum, Perforin 1, 2 and 3.

Eukaryota
Apicomplexa
Perforin 1 of Plasmodium falciparum
1.C.39.7.1









MAC/Perforin domain protein

Eukaryota
Ciliophora
MACPF domain protein of Tetrahymena thermophila (Q23QV5)
1.C.39.7.2









Uncharacterized protein of 1040 aas

Eukaryota
UP of Capsaspora owczarzaki
1.C.39.7.3









The MAC/Perforin domain containing protein of 861 aas

Eukaryota
Ciliophora
MACPF protein of Oxytricha trifallax
1.C.39.7.4









Apextrin of 853 aas

Eukaryota
Metazoa, Cnidaria
Apextrin of Acropora millepora (Staghorn coral)
1.C.39.7.5









Putative uncharacterized phospholipase D endonuclease of 487 aas

Bacteria
Myxococcota
UP of Myxococcus fulvus
1.C.39.8.1









MACPF-Hemopexin protein.  The MACPF domain forms pores in the membrane while the hemopexin domain fuctions as a heme scavenging domain, protecting the cell against heme toxicity (Mehta and Reddy 2015).

Bacteria
Myxococcota
Hemopexin of Plesiocystis pacifica (A6G7F3)
1.C.39.8.2









The MACPF protein homologue with hemopexin-like C-terminal repeats

Bacteria
Pseudomonadota
MACPF protein of Beggiotoa sp. PS (A7BVI9)
1.C.39.8.3









Photopexin a/b-like protein of 347 aas.

Bacteria
Pseudomonadota
Photopexin of Photorhabdus temperat
1.C.39.9.1









MACPF homologue

Eukaryota
Fungi, Basidiomycota
MACPF homologue of Postia placenta (B8PKX3)
1.C.39.9.2









Uncharacterized MACPF protein of 446 aas.  The MACPF domain includes residues 120 - 320.

Eukaryota
Fungi, Ascomycota
UP of Emericella nidulans (Aspergillus nidulans)
1.C.39.9.3









Uncharacterized MACPF protein of 483 aas

Eukaryota
Fungi, Ascomycota
UP of Fusarium oxysporum f. sp. vasinfectum
1.C.39.9.4









Uncharacterized MACPF protein of 420 aas

Eukaryota
Fungi, Ascomycota
UP of Trichophyton verrucosum
1.C.39.9.5









Uncharacterized protein of 461 aas

Eukaryota
Fungi, Basidiomycota
UP of Ceriporiopsis subvermispora (White-rot fungus)
1.C.39.10.1









Sea anemone toxin, AvTX-60A, of 498aas (Oshiro et al., 2004).

Eukaryota
Metazoa, Cnidaria
AvTX-60A of Actineria villosa (Q76DT2)
1.C.39.10.2









MACPF-containing actinoporin of 488 aas, PsTX60B (Frazão et al. 2012).

Eukaryota
Metazoa, Cnidaria
PsTX60B of Phyllodiscus semoni (Night anemone)
1.C.39.10.3









Uncharacterized protein of 449 aas

Eukaryota
Viridiplantae, Streptophyta
UP of Selaginella moellendorffii (Spikemoss)
1.C.39.10.4









Uncharacterized protein of 474 aas

Eukaryota
Metazoa, Cnidaria
UP of Nematostella vectensis (Starlet sea anemone)
1.C.39.11.1









MACPF protein (610aas)

Eukaryota
Viridiplantae, Streptophyta
MACPF protein of Medicago truncatula (Q1SKW8)
1.C.39.11.2









MACPF protein (615aas) 

Eukaryota
Viridiplantae, Streptophyta
MACPF protein of Populus trichocarpa (B9GNC9)
1.C.39.11.3









The constitutively activated cell death 1 protein (CAD1) of 561 aas (Morita-Yamamuro et al. 2005; Tsutsui et al. 2006Tsutsui et al. 2006).

Eukaryota
Viridiplantae, Streptophyta
CAD1 of Arabidopsis thaliana
1.C.39.11.4









The Necrotic Spotted Lesions 1 (NSL1) protein of 612 aas (Noutoshi et al. 2006).

Eukaryota
Viridiplantae, Streptophyta
NSL1 of Arabidopsis thaliana
1.C.39.12.1









MACPF protein (809aas)

Bacteria
Chlamydiota
MACPF protein of Chlamydia muridarum (Q9PKN4)
1.C.39.12.2









MACPF homologue (411aas)

Bacteria
Chlamydiota
MACPF homologue of Chlamydophila pneumoniae (Q9Z908)
1.C.39.12.3









MACPF protein, CT153 of 810 aas.  Mediates interactions with host cell membranes and organelles, and plays a role in intracellular development (Taylor and Nelson 2014).

Bacteria
Chlamydiota
CT153 protein of Chlamydia trachomatis
1.C.39.12.4









MACPF domain protein of 834 aas

Bacteria
Chlamydiota
MACPF protein of Chlamydia psittaci
1.C.39.13.1









Hypothetical protein (470aas)

Bacteria
Bacteroidota
HP of Bacteroides thetaiotaomicron (Q8A335)
1.C.39.13.2









MACPF-domain containing protein, BSAP-1, of 372 aas and 1 N-terminal TMS, secreted in extracellular vesicles. It contains a membrane attack complex/perforin (MACPF) domain that kills bacteria by pore formation, and mutations affecting key residues of this domain abrogated its activity (Chatzidaki-Livanis et al. 2014). Extracellular Vesicles can be relevant to Endocrinology in mammals (Das Gupta et al. 2021).

Bacteria
Bacteroidota
BSAP1 of Bacteroides fragilis (Q64VU4)
1.C.39.13.3









Hypothetical Protein (486 aas)

Bacteria
Bacteroidota
HP of Bacteroides fragilis (Q64W10)
1.C.39.13.4









MACPF protein. The structure is known (Xu et al., 2010).

Bacteria
Bacteroidota
MACPF protein of Bacteroides thetaiotaomicron (Q8A267)
1.C.39.13.5









Uncharacterized protein

Bacteria
Bacteroidota
UP of Paraprevotella xylaniphila
1.C.39.13.6









MAC/Perforin domain protein BSAP-4 of 506 aas and 1 N-terminal TMS.

Bacteria
Bacteroidota
BSAP-4 of Bacteroides fragilis
1.C.39.13.7









MACPF domain-containing protein, BASP2, of 508 aas (Roelofs et al. 2016). 

Bacteria
Bacteroidota
BASP2 of Bacteroides uniformis
1.C.39.13.8









MACPF domain-containing protein, BSAP3, of 485 aas and one N-terminal TMS (McEneany et al. 2018).

Bacteria
Bacteroidota
BSAP3 of Bacteroides dorei
1.C.39.14.1









Macrophage-expressed gene 1 protein, Mpeg1, or perforin-2, PFN2, of 716 aas and one C-terminal TMS.  Pore formation has been demonstrated in target bacteria (McCormack et al. 2013). PFN2 undergoes a pre-pore to pore transition upon acidification (Jiao et al. 2021). Rawat and Jakubzick 2023 showed that channeling of antigens to CD8+ T cells is facilitated by perforin-2. It translcates the antigens to the cytosol in cross-presenting dendritic cells. A hexadecameric perforin-2 pore forms in phagosome membranes to fåcilitat transport of antigens to the cytosol (Rawat and Jakubzick 2023).  Cytosolic antigens use classical MHC-I pathway molecules for cross presentation (ubiquitination, proteasome degradation, and TAP transport into the endoplasmic reticulum).

Eukaryota
Metazoa, Chordata
Mpeg1 of Homo sapiens
1.C.39.14.2









MACPF domain protein, Mpeg of 742 aas.  This protein is found in late endosomes.  Its MACPF domain exhibits anti-bacterial activity against Gram - and Gram + bacteria.  It's synthesis is stimulated following infection with Vibrio alginolyticus (He et al. 2011).

Eukaryota
Metazoa, Mollusca
Mpeg of Crassostrea gigas (Pacific oyster) (Crassostrea angulata)
1.C.39.14.3









Mpeg1 of 728 aas.  Contains a cytolytic MACPF domain.  Expressed in up to 8x increase in hematocytes and epipodia samples after exposure to heat killed Vibrio anguilarum (Kemp and Coyne 2011).

Eukaryota
Metazoa, Mollusca
Mpeg1 of Haliotis midae (perlemoen abalone)
1.C.39.14.4









Mpeg1 of 718 aas (Benard et al. 2014).

Eukaryota
Metazoa, Chordata
Mpeg1 of Danio rerio (Zebrafish) (Brachydanio rerio)
1.C.39.14.5









Macrophage-expressed protein 1, Mpeg1, of 784 aas and 2 TMSs, N- and C-terminal. Mpeg1/Perforin-2 (PRF2)) is a family of pore-forming proteins (PFPs) which can form pores and destroy the cell membrane of invading pathogens (Liu et al. 2022). Ct-Mpeg1 is an important immune molecule of C. tritonis that is involved in the bacterial infection resistance of Vibrio species (Liu et al. 2022).

Eukaryota
Metazoa, Mollusca
Mpeg1 of Charonia tritonis (giant triton snail)
1.C.39.15.1









Torso-like protein, Tsl of 353 aas and containing a MACPF domain.  Possible ligand that binds to the torso receptor. Implicated in a receptor tyrosine kinase signaling pathway that specifies differentialtion and terminal cell fate (Martin et al. 1994; Savant-Bhonsale and Montell 1993; Johnson et al. 2013; Mineo et al. 2015).

Eukaryota
Metazoa, Arthropoda
Tsl of Drosophila melanogaster (Fruit fly)
1.C.39.15.2









Uncharacterized Torso-like protein of 271 aas

Eukaryota
Metazoa, Arthropoda
Torso-like protein of Daphnia pulex (Water flea)
1.C.39.16.1









Uncharacterized protein of 784 aas

Eukaryota
Fungi, Ascomycota
UP of Penicillium marneffei
1.C.39.16.2









Uncharacterized protein of 795 aas

Eukaryota
Fungi, Ascomycota
UP of Cladophialophora psammophila
1.C.39.17.1









The BMP/retinoic acid-inducible neural-specific protein 1, BRINP1 (DBC1, DBCCR1, FAM5A), protein of 761 aas. Inhibits cell proliferation by negative regulation of the G1/S transition and mediates cell death which is not of the classical apoptotic type while regulating expression of components of the plasminogen pathway (Wright et al. 2004; Nishiyama et al. 2001; Louhelainen et al. 2006).

Eukaryota
Metazoa, Chordata
BRINP-1 of Homo sapiens
1.C.39.17.2









BRINP-2 (BRINP2, FAM5B) of 783 aas.  Inhibits neuronal cell proliferation by negative regulation of the cell cycle transition.

Eukaryota
Metazoa, Chordata
BRINP-2 of Homo sapiens