TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
1.E.2.1.1 | Lysis protein S of phage lambda, holin S105. The lambda-holin protein can mediate a caspase-independent non-apoptotic mode of cell death (Agu et al. 2007). Topological class I with three TMSs. The N-terminus is outside and the C-terminus is inside (Graschopf and Bläsi 1999; Gründling et al. 2000). Nearly identical to the holin of Shigella phage Sf6 (Dover et al. 2016). It lambda protein has a three-helix topology with an unstructured C-terminal domain, as well as at least one interface on TMS1 which is exposed to the lumen of the hole, and a highly constrained steric environment suggestive of a tight helical packing interface at TMS2 (Morris et al. 2023). | Viruses |
Heunggongvirae, Uroviricota | Lysis protein S (105 aas; spP03705) |
1.E.2.1.2 | Lysis protein 13, gp65 of enterobacterial phage P22. | Viruses |
Heunggongvirae, Uroviricota | Lysis protein 13 (108 aas; spP09962) |
1.E.2.1.3 | Hypothetical lysis protein | Bacteria |
Pseudomonadota | Hypothetical lysis protein (118 aas; spP44188) |
1.E.2.1.4 | Hol-1 of lysogenic Xenorhabdus nematophila (Brillard et al., 2003) | Bacteria |
Pseudomonadota | Hol-1 of lysogenic Xenorhabdus nematophila (CAB58444) |
1.E.2.1.5 | Bacteria |
Pseudomonadota | Putative holin of Pseudomonas syringae | |
1.E.2.1.6 | Putative holin | Bacteria |
Pseudomonadota | Putative holin of Klebsiella oxytoca |
1.E.2.1.7 | Putative holin | Bacteria |
Pseudomonadota | Putative holin of Pantoea sp. |
1.E.2.1.8 | Putative holin | Bacteria |
Pseudomonadota | Putative holin of Actinobacillus succinogenes |
1.E.2.1.9 | Putative phage-like holin of 112 aas and 3 TMSs | Bacteria |
Pseudomonadota | putative holin of Hamiltonella defensa subsp. Acyrthosiphon pisum |
1.E.2.1.10 | Holin of 108 aas; the gene is in a prophage genome adjacent to genes encouding a lysozyme inhibitor and a lytic protein. | Bacteria |
Pseudomonadota | Holin of E. coli |
1.E.2.1.11 | Holin (N-terminal 100 aas) fused to a D-alanyl-D-alanine carboxypeptidase (C-terminal 138 aas). The protein is 238 aas in length with 3 N-terminal TMSs. | Bacteria |
Pseudomonadota | Fusion holin of Serratia odorifera |
1.E.2.1.12 | Putative holin of 96 aas and 3 TMSs. | Bacteria |
Pseudomonadota | Holin of Acinetobacter proteolyticus |
1.E.2.1.13 | Holin, lambda family, of 108 aas and 3 TMSs, ChiW (Hamilton et al. 2014). It is involved (possibly indirectly) in chitinase secretion (Costa et al. 2019). | Bacteria |
Pseudomonadota | Holin of Serratia marcescens |
1.E.2.1.14 | Holin of 110 aas and 3 TMSs (Czajkowski 2019). | Bacteria |
Pseudomonadota | Holin of Pectobacterium zantedeschiae |
1.E.2.1.15 | Holin of 110 aas with 3 TMSs. | Bacteria |
Pseudomonadati, Pseudomonadota | Holin of Enterobacter cloacae |
1.E.2.2.1 | Helicobacter phage 1961P holin_3 superfamily protein | Viruses |
Heunggongvirae, Uroviricota | Helicobacter phage 1961P holin |
1.E.2.2.2 | Putative holin | Bacteria |
Campylobacterota | Putative holin of Campylobacter concisus |
1.E.2.2.3 | Putative holin | Bacteria |
Campylobacterota | Putative holin of Campylobacter jejuni |
1.E.2.2.4 | Putative holin | Bacteria |
Campylobacterota | Putative holin of Arcobacter butzleri |
1.E.2.3.1 | Phage-holin-3 superfamily (CDD) member of 72 aas and possibly 1-2 TMSs. Therre were no obvious homologues in the NCBI database as of 3/3/14. However, rseidues 9 - 54 in this protein match residues 9 - 54 in TC# 1.E.2.1.1 with 35% identity and 46% similarity with no gaps. | Bacteria |
Cyanobacteriota | Putative holin of Cyanothece sp. PCC 7425 |
1.E.2.3.2 | Uncharacterized protein of 71 aas and 1 or 2 TMSs | Bacteria |
Cyanobacteriota | UP of Nostoc linckia |
1.E.2.3.3 | Uncharacterized protein of 83 aas and 1 TMS. | Bacteria |
Cyanobacteriota | UP of Oculatella sp. FACHB-28 |
1.E.2.3.4 | Uncharacterized protein of 72 aas and 1 or 2 TMSs. | Bacteria |
Cyanobacteriota | UP of Calothrix brevissima |
1.E.2.3.5 | Uncharacterized protein of 61 aas and 1 or 2 TMSs. | Bacteria |
Cyanobacteriota | UP of Leptolyngbya sp. FACHB-321 |
1.E.2.3.6 | Uncharacterized protein of 68 aas and 1 or 2 TMSs. | Bacteria |
Bacteroidota | UP of Flavobacterium sp. CLA17 |
1.E.2.3.7 | Uncharacterized protein of 64 aas and 1 TMS | Bacteria |
Cyanobacteriota | UP of Desertifilum sp. SIO1I2 |
1.E.2.3.8 | Uncharacterized protein of 71 aas and 1 or 2 TMSs. | Bacteria |
Cyanobacteriota | UP of Trichocoleus sp. FACHB-591 |
1.E.2.4.1 | Putative holin of 93 aas and 3 TMSs (Zampara et al. 2020). | Viruses |
Heunggongvirae, Uroviricota | Holin of Campylobacter phage F375 |
1.E.2.4.2 | Uncharacterized protein of 101 aas and 3 TMSs in a 1 + 2 TMS arrangement. | Bacteria |
Campylobacterota | UP of Campylobacter sp. LR286c |
1.E.2.4.3 | Phage holin family protein of 111 aas and 3 TMSs in a 1 + 2 TMS arrangement. | Bacteria |
Campylobacterota | Holin of Helicobacter japonicus |
1.E.2.4.4 | Uncharacterized protein of 113 aas and 3 TMSs in a 1 + 2 TMS arrangement. | Bacteria |
Campylobacterota | UP of Campylobacter troglodytis |