TCDB is operated by the Saier Lab Bioinformatics Group
TCIDNameDomainKingdom/PhylumProtein(s)
1.W.6.1.1









The Bacillus phage phi29 (φ29) portal protein of 309 aas.  It forms the portal vertex of the capsid (Ibarra et al. 2000Fu and Prevelige 2009; Grimes et al. 2011). This portal plays roles in head assembly, genome packaging, neck/tail attachment, and genome ejection. The portal protein multimerizes as a single ring-shaped homododecamer arranged around a central channel (Guasch et al. 2002, Grimes et al. 2011). It binds to the 6 packaging RNA molecules (pRNA), forming a double-ring structure which in turn binds to the ATPase gp16 hexamer, forming the active DNA-translocating motor (Xiao et al. 2005, Simpson et al. 2000). This complex is essential for the specificity of packaging from the left DNA end.

Viruses
Heunggongvirae, Uroviricota
PPP of Bacillus phage phi29
1.W.6.1.2









Uncharacterized protein of 358 aas

Bacteria
Candidatus Melainabacteria
UP of Candidatus Melainabacteria bacterium (human gut metagenome)
1.W.6.1.3









Capsid and scaffold protein of 344 aa

Viruses
Heunggongvirae, Uroviricota
Capsid protein of Enterococcus phage vB_EfaP_Efmus1
1.W.6.2.1









Uncharacterized protein of 309 aas

Bacteria
Mycoplasmatota
UP of endosymbiont GvMRE
1.W.6.2.2









Uncharacterized protein of 310 aas

Bacteria
Mycoplasmatota
UP of endosymbiont GvMRE of Glomus versiforme
1.W.6.3.1









Uncharacterized protein of 334 aas

Bacteria
Mycoplasmatota
UP of Mycoplasmataceae bacterium CE_OT135 (symbiont metagenome)
1.W.6.3.2









Uncharacterized protein of 306 aas

Bacteria
Mycoplasmatota
UP of endosymbiont DhMRE of Dentiscutata heterogama
1.W.6.3.3









Uncharacterized protein of 275 aas

Eukaryota
Fungi, Ascomycota
UP of Terfezia boudieri
1.W.6.4.1









Uncharacterized protein of 700 aas

Eukaryota
Fungi, Ascomycota
UP of Pseudogymnoascus verrucosus
1.W.6.4.2









Uncharacterized protein of 643 aas

Eukaryota
Fungi, Basidiomycota
UP of Kalmanozyma brasiliensis