TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
3.D.2.1.1 | H+-translocating transhydrogenase, α2β2 heterotetrameric PTH. Ligand binding and conformational dynamics of the enzyme have been revealed by hydrogen/deuterium exchange mass spectrometry (Zöller et al. 2022). | Bacteria |
Pseudomonadota | α2β2 heterotetrameric PTH of E. coli |
3.D.2.2.1 | H+-translocating transhydrogenase | Bacteria |
Pseudomonadota | (α1)2(α2)2β2 heterohexameric PTH of Rhodospirillum rubrum |
3.D.2.2.2 | H+-transporting NADH/NADP Transhydrogenase, PntA1 (α1)/PntA2 (α2)/PntB (β). A 3-d structure is available (Leung et al. 2015). Another structre (2.2 Å resolution) revealed conformational changes of helix positions from the previous structure solved at pH 8.5, and internal water molecules interacting with residues implicated in proton translocation. Water flows across a narrow pore and a hydrophobic "dry" region in the middle of the membrane channel, with key residues His42alpha2 (chain A) being protonated and Thr214beta (chain B) displaying a conformational change, respectively, to gate the channel access to both cytoplasmic and periplasmic chambers. Mutation of Thr214beta to Ala deactivated the enzyme (Padayatti et al. 2017). | Bacteria |
Deinococcota | Transhydrogenase of Thermus thermophilus α1 subunit of 375 aas (Q72GR8) α2 subunit of 100 aas (Q72GR9) β subunit of 450 aas (Q72GS0) |
3.D.2.3.1 | H+-translocating transhydrogenase | Eukaryota |
Metazoa, Chordata | Homodimeric PTH of Bos taurus |
3.D.2.4.1 | H+-translocating transhydrogenase | Eukaryota |
Apicomplexa | PTH of Eimeria tenella |