TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
9.A.75.1.1 | The MHCII complex of three proteins, DQ alpha-1, DQ beta-1 (which form a heterodimer) and a CD75 homotrimer that together form a nanomer with 3 copies of the MHCII dimer. It transports antigenic peptides to the cell surface (Wosen et al. 2018). The structure, topology, and dynamics of membrane-inserted polypeptides and lipids have been examined by solid-state NMR spectroscopy, specifically with respect to the transmembrane domains of the DQ Beta-1 subunit of the MHC II receptor and the COP I protein, p24 (Salnikov et al. 2019). | Eukaryota |
Metazoa, Chordata | MHC II complex of Homo sapiens |
9.A.75.1.2 | HLA class I histocompatibility antigen, HLA-A (HLAA), of 365 aas and 1 C-terminal TMS (Saunders and van Endert 2011). It acts with beta-2 (β-2) microglobulin B2M (P61769). There are many HLA antigens (HLAA, B, C, E, F and G, all homologous to each other and of 338 to 366 aas in length with a C-terminal TMS. Tapasin (TAPA, TABBP, NGS17 of 448 aas) is a necessary accessory protein for proper presentation of peptide antigens (Sadegh-Nasseri et al. 2008). A charged amino acyl residue in the transmembrane/cytoplasmic region of tapasin influences MHC class I assembly and maturation (Petersen et al. 2005). The human specific poxvirus molluscum contagiosum virus (MCV) has developed robust immune evasion strategies (Harvey et al. 2019). MCV-encoded MC80 can disrupt MHC-I antigen presentation in human and mouse cells. MC80 shares moderate sequence-similarity with MHC-I, and it associates with components of the peptide-loading complex. Expression of MC80 results in ER-retention of host MHC-I and thereby reduced cell surface presentation. MC80 accomplishes this by engaging tapasin via its luminal domain, targeting it for ubiquitination and ER-associated degradation in a process dependent on the MC80 transmembrane region and cytoplasmic tail. Tapasin degradation is accompanied by a loss of TAP, which limits MHC-I access to cytosolic peptides (Harvey et al. 2019). | Eukaryota |
Bamfordvirae, Nucleocytoviricota | HLA-A of Homo sapiens |
9.A.75.1.3 | Additional subunits of human HLA complexes including HLA-A (HLAA, 365 aas, P04439), HLA-B (HLAB, 203 aas, P01889), HLA-C (HLAC, 366 aas, P10321), and HLA_E (HLAE, 358 aas, P13747), all with two TMSs, N- and C-terminal. | Eukaryota |
Metazoa, Chordata | HLA complex subunits with names similar but sequences dissimilar to/from those listed under TC#s 9.A.75.1.1 and 9.A.75.1.2 of Homo sapiens |
9.A.75.1.4 | The neonatal Fc receptor (FcRn), subunit p51 of 365 aas and one C-terminal TMS possibly with one N-terminal TMS as well. Early floral colonization affects intestinal immunoglobulin G uptake in piglets, which may be mediated by the NF-kappaB-FcRn pathway, with FcRn as the actual transmembrane carrier (Peng et al. 2023).
| Eukaryota |
Metazoa, Chordata | FcRn of Homo sapiens |