TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
9.B.14.1.1 | The cytochrome c biogenesis protein, CcmF | Bacteria |
Pseudomonadota | CcmF (Ccl1) of Rhodobacter capsulatus |
9.B.14.1.2 | The cytochrome c biogenesis protein, CycK | Bacteria |
Pseudomonadota | CycK of Bradyrhizobium japonicum |
9.B.14.1.3 | The cytochrome c biogenesis protein, CcmF | Bacteria |
Pseudomonadota | CcmF (CycK) of E. coli (P33927) |
9.B.14.1.4 | C-type biosynthesis protein, CcmF (620 aas; 17 TMSs) (resembles 9.B.67.3.3, and possibly APC family (2.A.3) members) | Eukaryota |
Rhodophyta | CcmF of Cyanidioschyzon merolae (Q9ZZP7) |
9.B.14.1.5 | Cytochrome C-type biogenesis protein, CcmF | Archaea |
Euryarchaeota | CcmF of Haloarcula marismortui (Q5V2F3) |
9.B.14.1.6 | Mitochondrial cytochrome C-type biogenesis protein, CcmF of 442 aas and 6 - 8 TMSs. | Eukaryota |
Viridiplantae, Streptophyta | CcmF of Arabidopsis thaliana (P93286) |
9.B.14.1.7 | Cytochrome biogenesis protein, CcmF (involved also in pyoverdine maturation) (Baert et al. 2008). It is 657 aas long with 15 TMSs in a 14 + 1 TMS arrangement. | Bacteria |
Pseudomonadota | CcmF of Pseudomonas aeruginosa |
9.B.14.1.8 | MURF1 protein of 443 aas and 16 TMSs | Eukaryota |
Euglenozoa | MURF1 of Leishmania tarentolae (Sauroleishmania tarentolae) |
9.B.14.1.9 | Putative XkR8 (TC family 2.A.112) homologue of 235 aas and 6 TMSs. | Bacteria |
Campylobacterota | XkR8 homologue of Campylobacter jejuni |
9.B.14.1.10 | Uncharacterized protein of 796 aas and 19 TMSs | Bacteria |
Spirochaetota | UP of Leptospira interrogans |
9.B.14.1.11 | Heme maturase of 518 aas and 13 TMSs, YejR | Eukaryota |
Ciliophora | YejR of Tetrahymena thermophila |
9.B.14.1.12 | Uncharacterized protein of 285 aas and 6 TMSs | Eukaryota |
Fungi, Ascomycota | UP of Candida albicans |
9.B.14.1.13 | AgrC of 429 aas and 6 TMSs | Bacteria |
Bacillota | AgrC of Stahpylococcus epidermidis |
9.B.14.1.14 | Uncharacterized protein of 225 aas and 6 TMSs. | Bacteria |
Thermotogota | UP of Petrotoga mobilis |
9.B.14.1.15 | Uncharacterized protein of 263 aas and 7 TMSs | Bacteria |
Fusobacteriota | UP of Fusobacterium nucleatum |
9.B.14.1.16 | Uncharacterized protein of 257 aas and 6 TMSs | Bacteria |
Bacillota | UP of Caldicellulosiruptor lactoaceticus |
9.B.14.1.17 | Uncharacterized protein of 434 aas and 7 TMSs. | Bacteria |
Bacillota | UP of Roseburia intestinalis |
9.B.14.1.18 | Uncharacterized GHKL domain-containing protein of 445 aas and 6 TMSs. | Bacteria |
Bacillota | UP of Clostridium hungatei |
9.B.14.1.20 | Uncharacteerized ATP-binding protein of 424 aas and 7 N-terminal TMSs and a C-terminal hydrophilic domain. | Bacteria |
Bacillota | UP of Ruminococcus flavefaciens |
9.B.14.1.21 | CcmA/CcmD proteins, probably involved in cytochorme c matureation (heme insertion). CcmA iis of 353 aas with 9 TMSs, while CcmD is of 240 aas with 6 TMSs. They may function with CcmB (see TC# 3.A.1.107.5 (Gupta et al. 2022). | Archaea |
Euryarchaeota | CcmA/CcmD of Methanosarcina acetivorans |
9.B.14.2.1 | The putative heme exporter, HelC | Bacteria |
Pseudomonadota | HelC of Rhodobacter capsulatus (P29961) |
9.B.14.2.2 | The putative heme exporter, CcmC (CycZ). This protein is also listed under TC# 3.A.1.107.1 as part of an ABC transporter | Bacteria |
Pseudomonadota | CcmC (CycZ) of Bradirhizobium japonicum (P30962) |
9.B.14.2.3 | The putative heme exporter, CycZ (CcmC) | Bacteria |
Pseudomonadota | CycZ (CcmC) of E. coli (P0ABM1) |
9.B.14.2.4 | Putative heme exporter, CcmC; also involved in pyoverdine maturation (Baert et al. 2008). | Bacteria |
Pseudomonadota | CcmC of Pseudomonas aeruginosa |
9.B.14.2.5 | ABC-type cytochrome c biogenesis putative heme transport system permease component C of 234 aas | Bacteria |
Ignavibacteriota | Putative ABC-type cytochrome c biogenesis transport system permease component of Melioribacter roseus |
9.B.14.3.1 | Cytochrome c biogenesis protein, CcsBA (936 aas; 10 TMSs; 14 TMSs predicted by the WHAT program (Frawley and Kranz, 2009). May be a bifunctional protein with heme transport (export from the cytoplasm to the periplasm) and attachment to apocytochrome c (cytochrome c synthetase) activities. Two heme binding sites have been identified in a homologue, one in the membrane and one on the external surface (on the periplasmic side of the membrane) (Sutherland et al. 2018). Mendez et al. 2022 described cryo-EM structures of CcsBA, which, as noted above, is a bifunctional heme transporter and cytochrome c (cyt c) synthase. Models built from the cryo-EM densities show that CcsBA is trapped with heme in two conformations, closed and open states. The closed state has heme located solely at a transmembrane (TM) site, with a large periplasmic domain oriented such that access of heme to the cytochrome acceptor is prevented. The open conformation contains two heme moieties, one in the TM-heme site and another in an external site (P-heme site). The presence of heme in the periplasmic site at the base of a chamber induces a large conformational shift that exposes the heme for reaction with apocytochrome c (apocyt c). Consistent with these structures, in vivo and in vitro cyt c synthase studies suggest a mechanism for transfer of the periplasmic heme to cytochrome (Mendez et al. 2022). | Bacteria |
Campylobacterota | CcsBA of Helicobacter hepaticus (Q7VHG9) |
9.B.14.3.2 | Cytochrome c biogenesis protein CcsA | Bacteria |
Cyanobacteriota | ccsA of Prochlorococcus marinus |
9.B.14.3.3 | Cytochrome c biogenesis protein CcsA or Ccs1 of 353 aas. Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment (Inoue et al. 1997). | Eukaryota |
Viridiplantae, Chlorophyta | CcsA of Chlamydomonas reinhardtii |
9.B.14.3.4 | Cytochrome c biogenesis protein of 327 aas and 6 established TMSs, CcsA. | Bacteria |
Actinomycetota | CcsA of Mycobacterium leprae |
9.B.14.3.5 | Membrane protein of 266 aas and 8 putative TMSs. | Bacteria |
Pseudomonadota | Membrane protein of Pseudomonas aeruginosa |
9.B.14.3.6 | Putative cytochrome c assembly protein, YpjD of 263 aas and 8 TMSs. In an operon with YfjD, a putative Mg2+uptake protein (TC# 9.B.20.1.4). | Bacteria |
Pseudomonadota | YpjD of E. coli |
9.B.14.3.7 | Cytochrome c biogenesis protein, CcsA, of 309 aas and 8 TMSs. May be a bifunctional protein with heme transport (export from the cytoplasm to the periplasm) and attachment to apocytochrome c (cytochrome c synthetase) activities. Two heme binding sites have been identified in a homologue, one in the membrane and one on the external surface (on the periplasmic side of the membrane) (Sutherland et al. 2018). | Bacteria |
Cyanobacteriota | CcsA of Prochlorococcus marinus |
9.B.14.3.8 | Cytochrome c biogenesis protein, CcsA, of 309 aas and 8 TMSs. May be a bifunctional protein with heme transport (export from the cytoplasm to the periplasm) and attachment to apocytochrome c (cytochrome c synthetase) activities. Two heme binding sites have been identified in a homologue, one in the membrane and one on the external surface (on the periplasmic side of the membrane) (Sutherland et al. 2018). | Bacteria |
Campylobacterota | CcsB of Helicobacter pylori |
9.B.14.3.9 | Cytochrome c biogenesis protein, CcsB, of 1041 aas and 14 TMSs. May be a bifunctional protein with heme transport (export from the cytoplasm to the periplasm) and attachment to apocytochrome c (cytochrome c synthetase) activities. Two heme binding sites have been identified in a homologue, one in the membrane and one on the external surface (on the periplasmic side of the membrane) (Sutherland et al. 2018). | Bacteria |
Bacteroidota | CcsB of Flavobacterium psychrophilum |
9.B.14.3.10 | Uncharacterized protein of 271 aas and 8 TMSs. | Bacteria |
Planctomycetota | UP of Gemmataceae bacterium (freshwater metagenome) |
9.B.14.4.1 | XkR8 homologue of 383 aas and 11 TMSs. | Bacteria |
Spirochaetota | XkR8 homologue of Brachyspira murdochii |
9.B.14.4.2 | Putative XkR8 homologue of 404 aas and 11 TMSs. | Bacteria |
Spirochaetota | XkR8 homologue of Brachyspira pilosicoli |
9.B.14.4.3 | Putative XkR8 homologue of 587 aas and 12 TMSs. | Bacteria |
Mycoplasmatota | Putative XkR8 homologue of Mycoplasma mycoides |
9.B.14.4.4 | Uncharacterized protein of 431 aas and 5 TMSs in a 1 (N-terminal) + 4 (C-terminal) TMS arrangement. | Eukaryota |
Apicomplexa | UP of Plasmodium yoelii |
9.B.14.4.5 | O-antigen polymerase of 439 aas and 10 TMSs. | Bacteria |
Pseudomonadota | Polymerase of Candidatus Pelagibacter |
9.B.14.4.6 | Uncharacterized protein of 497 aas and 12 TMSs. | Bacteria |
Mycoplasmatota | UP of Mycoplasma collis |
9.B.14.5.1 | Putative bacteriocin immunity protein of 572 aas and 14 putative TMSs. | Bacteria |
Bacillota | Imm protein of Bacillus cereus |
9.B.14.5.2 | Uncharacterized protein of 588 aas and about 15 TMSs. | Bacteria |
Bacillota | UP of Bacillus cereus |