TCDB is operated by the Saier Lab Bioinformatics Group

9.B.447.  The 1-Acyl-sn-Glycerol-3-Phosphate Acyltransferase gamma (AGPAT3) Family 

Acylation of diverse carbohydrates occurs across all domains of life and can be catalysed by proteins with a membrane bound acyltransferase-3 (AT3) domain (PF01757) (Newman et al. 2023). In bacteria, these proteins are essential in processes including symbiosis, resistance to viruses and antimicrobials, and biosynthesis of antibiotics Evolutionary co-variance analysis has been used to build a computational model of the structure of a bacterial O-antigen modifying acetyltransferase, OafB. The resulting structure exhibited a novel fold for the AT3 domain, which molecular dynamics simulations demonstrated is stable in the membrane. The AT3 domain contains 10 transmembrane helices arranged to form a large cytoplasmic cavity lined by residues known to be essential for function. Further molecular dynamics simulations support a model in which the acyl-CoA donor spans the membrane through accessing a pore created by movement of an important loop capping the inner cavity, enabling OafB to present the acetyl group close to the likely catalytic resides on the extracytoplasmic surface. Limited but important interactions with the fused SGNH domain in OafB were identified, and modelling suggests this domain is mobile and can both accept acyl-groups from the AT3 domain and then reach beyond the membrane to access acceptor substrates. This new general model of AT3 function provides a framework for the development of inhibitors that could abrogate critical functions of bacterial pathogens (Newman et al. 2023).

References associated with 9.B.447 family:

Leung, D.W. (2001). The structure and functions of human lysophosphatidic acid acyltransferases. Front Biosci 6: D944-953. 11487472
Newman, K.E., S.N. Tindall, S.L. Mader, S. Khalid, G.H. Thomas, and M.W. Van Der Woude. (2023). A novel fold for acyltransferase-3 (AT3) proteins provides a framework for transmembrane acyl-group transfer. Elife 12:. 36630168
Prasad, S.S., A. Garg, and A.K. Agarwal. (2011). Enzymatic activities of the human AGPAT isoform 3 and isoform 5: localization of AGPAT5 to mitochondria. J Lipid Res 52: 451-462. 21173190