1.A.134.  The Nutrient-sensing Ion-conducting Pore-forming GerAA (NIP-GerAA) Family

Bacterial spores resist antibiotics and sterilization and can remain metabolically inactive for decades, but they can rapidly germinate and resume growth in response to nutrients (amino acids, sugars and nucelosides/tides). Broadly conserved receptors embedded in the spore membrane detect nutrients. Gao et al. 2023 found that these receptors form oligomeric membrane channels. Mutations predicted to widen the channel initiated germination in the absence of nutrients, whereas those that narrow it prevented ion release and germination in response to nutrients. Expressing receptors with widened channels during vegetative growth caused loss of membrane potential and cell death, whereas the addition of germinants to cells expressing wild-type receptors triggered membrane depolarization. Therefore, germinant receptors act as nutrient-gated ion channels such that ion release initiates exit from dormancy. GerAA is believed to be the ion channel component; GerAB is the nutrient sensor, and GerAC is a membrane surface lipoprotein (Gao et al. 2023). The NIP-GerAA family includes only the ion channel subunit.


 

References:

Gao, Y., J.D. Amon, L. Artzi, F.H. Ramírez-Guadiana, K.P. Brock, J.C. Cofsky, D.S. Marks, A.C. Kruse, and D.Z. Rudner. (2023). Bacterial spore germination receptors are nutrient-gated ion channels. Science 380: 387-391.

Examples:

TC#NameOrganismal TypeExample
1.A.134.1.1

The nutrient sensing ion channel protein, GerAA of 482 aas and 6 -terminal TMSs.  These 6 TMSs occur in a 2 + 2 + 2  arrangement (Gao et al. 2023).

GerAA of Bacillus subtilis

 
1.A.134.1.2

Germination ion channel protein, GerBA or GerB1, of 483 aas and 6 TMSs.

GerBA of Bacillus subtilis

 
1.A.134.1.3

Spore germination protein of 492 aas and 6 TMSs.

Germination protein of Clostridium aceticum

 
1.A.134.1.4

Sporulation germination ion channel protein of 571 aas and 6 TMSs.

Ger protein of Anaerobutyricum hallii

 
1.A.134.1.5

Protein involved in dipicolinic acid release from spores, SpoVAF, of 493 aas with 6 TMSs. See also TC# 9.A.11.1.1 for the complete complex.

SpoVAF of Bacillus subtilis