1.B.56 The Spirochaete Outer Membrane Porin (S-OMP) Family

Relapsing fever is a worldwide, endemic disease caused by several spirochetal species belonging to the genus Borrelia. During the recurring fever peaks, Borreliae proliferate quickly compared to the slow dissemination of Lyme disease Borrelia and therefore require efficient nutrient uptake from the blood of their hosts. Thein et al. (2008) described the first relapsing fever porin, which is present in the outer membranes of B. duttonii, B. hermsii, B. recurrentis, and B. turicatae. The pore-forming protein was designated Oms38, for outer membrane-spanning protein of 38 kDa. Oms38 was inserted with black lipid bilayers demonstrating that Oms38 forms small, water-filled channels of 80 pS in 1 M KCl that did not exhibit voltage-dependent closure. The Oms38 channel is slightl selective for anions and shows a ratio of permeability for cations over anions of 0.41 in KCl. Analysis of the deduced amino acid sequences demonstrated that Oms38 contains an N-terminal signal sequence which is processed under in vivo conditions. Oms38 is highly conserved within the four studied relapsing fever species, sharing an overall amino acid identity of 58% and with a strong indication for the presence of amphiphatic β-sheets. Homologues are found in Treponema species and Fibrobacter succinogens.

The generalized transport reaction catalyzed by Oms38 is:

molecules (in)→molecules (out) with slight anion selectivity.


 

References:

Thein, M., I. Bunikis, K. Denker, C. Larsson, S. Cutler, M. Drancourt, T.G. Schwan, R. Mentele, F. Lottspeich, S. Bergström, and R. Benz. (2008). Oms38 is the first identified pore-forming protein in the outer membrane of relapsing fever spirochetes. J. Bacteriol. 190: 7035-7042.

Examples:

TC#NameOrganismal TypeExample
1.B.56.1.1

Outer membrane porin, Oms38 (slightly anion selective)

Gram-negative bacteria

Oms38 of Borrelia duttonii (B5RLX6)

 
1.B.56.1.2

Putative porin of 319 aas

Spirochaetes

Putative porin of Treponema denticola

 
1.B.56.1.3

Putative porin of 316 aas

Spirochaetes

Putative porin of Spirochaeta africana

 
1.B.56.1.4

Putative porin of 326 aas

Spirochaetes

Putative porin of Treponema saccharophilum

 
1.B.56.1.5

Putative porin of 327 aas

Spirochaetes

Putative porin of Firbrobacter succinogenes

 
Examples:

TC#NameOrganismal TypeExample
1.B.56.2.1

Putative porin of 345 aas

Spirochaetes

Putative porin of Treponema saccharophilum

 
Examples:

TC#NameOrganismal TypeExample
1.B.56.3.1

Putative toxin of 318 aas

Proteobacteria

Putative toxin of Cystobacter fuscus

 
1.B.56.3.2

Putative toxin of 325 aas

Proteobacteria

Putative toxin of Myxococcus xanthus

 
Examples:

TC#NameOrganismal TypeExample
Examples:

TC#NameOrganismal TypeExample