The gene transfer agent of | ||||

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Westbye, A.B., M.M. Leung, S.M. Florizone, T.A. Taylor, J.A. Johnson, P.C. Fogg, and J.T. Beatty. (2013). Phosphate concentration and the putative sensor kinase protein CckA modulate cell lysis and release of the Rhodobacter capsulatus gene transfer agent. J. Bacteriol. 195: 5025-5040. | ||||

Examples: | ||||

TC# | Name | Organismal Type | Example | |

1.E.54.1.1 | Gene Transfer Agent (GTA) holin of 164 aas with 3 TMSs in a 1 + 2 TMS arrangement. Involved in GTA release from cells in stationary phase (Westbye | Proteobacteria | GTA holin of | |

1.E.54.1.2 | Putative holin of 195 aas and possibly 4 TMSs in a 1 (N-terminal) + 2 (central) +1 (C-terminal). | Proteobacteria | Putative holin of | |

1.E.54.1.3 | Putative holin of 186 aas and 2 or 3 TMSs, one of low hydrophobicity at the N-terminus, and 2 sharper peaks for higher hydrophobicity centrally located. | Proteobacteria | Holin homologue of | |

1.E.54.1.4 | Putative holin of 181 aas of the DUF3154 family. | Proteobacteria | Putative holin of | |

1.E.54.1.5 | Putative holin of 177 aas and 2 - 4 TMSs. | Proteobacteria | Putative holin of | |

Examples: | ||||

TC# | Name | Organismal Type | Example | |

1.E.54.2.1 | Putative holin of 134 aas and 3 TMSs, one N-terminal and two central. | Proteobacteria | Putative holin of | |

1.E.54.2.2 | Putative holin of 136 aas and 2 TMSs. | Proteobacteria | Putative holin of | |

1.E.54.2.3 | Putative holin of 113 aas and 2 TMSs | Proteobacteria | Putative holin of | |

1.E.54.2.4 | Putative holin of 150 aas and 2 TMSs | Proteobacteria | Putative holin of | |

1.E.54.2.5 | Putative holin of 196 aas and 2 or 3 TMSs. | Proteobacterial virus | Putative holin of | |

1.E.54.2.6 | Putative holin of 121 aas and 2 TMSs. | Proteobacteria | Putative holin of | |

Examples: | ||||

TC# | Name | Organismal Type | Example | |

1.E.54.4.1 | Gp21 protein of 145 aas and 2-3 TMSs | Gp21 of | ||

1.E.54.4.2 | Putative holin of 148 aas and 2 TMSs | Putative holin of | ||

1.E.54.4.3 | Uncharacterized protein of 149 aas and 2 putative TMSs | UP of | ||

1.E.54.4.4 | Uncharacterized protein of 168 aas and 2 - 3 TMSs | UP of | ||

1.E.54.4.5 | Uncharaterized protein of 145 aas and 2 TMSs | UP of | ||

1.E.54.4.6 | Uncharacterized protein of 132 aas and 2 TMSs | UP of | ||

1.E.54.4.7 | Uncharacterized protein of 87 aas and 2 TMSs | UP of | ||

Examples: | ||||

TC# | Name | Organismal Type | Example | |

1.E.54.5.1 | Uncharacterized protein of 137 aas and 3 TMSs | UP of | ||

1.E.54.5.2 | Uncharacterized protein of 144 aas and 2 - 3 TMSs | UP of | ||