2.A.104 The L-Alanine Exporter (AlaE) Family

The AlaE family is the same as the DUF1144 Family.  A mutant that is hypersensitive to L-alanyl-L-alanine from a non-L-alanine-metabolizing E. coli strain lacked an inducible L-alanine export system and accumulates intracellular L-alanine with a reduction in the L-alanine export rate. When the mutant was used to clone genes that complement the dipeptide-hypersensitive phenotype, two uncharacterized genes, ygaW and ytfF, and two characterized genes, yddG and yeaS, were identified (Hori et al., 2011). Overexpression of each gene in the mutant resulted in a decrease in the intracellular L-alanine level and enhancement of the L-alanine export rate in the presence of the dipeptide, suggesting that their products function as exporters of L-alanine. Since ygaW exhibited the most striking impact on both the intra- and the extracellular L-alanine levels among the four genes identified, Hori et al. (2011) disrupted the ygaW gene in the non-L-alanine-metabolizing strain. The resulting isogenic mutant showed the same intra- and extracellular L-alanine levels as observed in the dipeptide-hypersensitive mutant obtained by chemical mutagenesis. When each gene was overexpressed in the wild-type strain, which does not intrinsically excrete alanine, only the ygaW gene conferred on the cells the ability to excrete alanine. In addition, expression of the ygaW gene was induced in the presence of the dipeptide. Thus, ygaW is likely to be the gene encoding the physiologically most relevant exporter for L-alanine in E. coli. AlaE forms homo-oligomers, and the GxxxG motif in the TMS4 region plays an essential role in AlaE activity but not in AlaE oligomer formation (Ihara et al. 2022).



This family belongs to the Transporter-Opsin-G protein-coupled receptor (TOG) Superfamily.

 

References:

Hori, H., H. Yoneyama, R. Tobe, T. Ando, E. Isogai, and R. Katsumata. (2011). Inducible L-alanine exporter encoded by the novel gene ygaW (alaE) in Escherichia coli. Appl. Environ. Microbiol. 77: 4027-4034.

Ihara, K., S. Kim, T. Ando, and H. Yoneyama. (2022). Importance of transmembrane helix 4 of l-alanine exporter AlaE in oligomer formation and substrate export activity in. Microbiology (Reading) 168:.

Kim, S., K. Ihara, S. Katsube, T. Ando, E. Isogai, and H. Yoneyama. (2016). Impact of charged amino acid substitution in the transmembrane domain of L-alanine exporter, AlaE, of Escherichia coli on the L-alanine export. Arch. Microbiol. [Epub: Ahead of Print]

Examples:

TC#NameOrganismal TypeExample
2.A.104.1.1

The L-alanine exporter, AlaE (YgaW) of 149 aas and 4 TMSs. (In the DUF1144 or PF06610 superfamily) (Hori et al., 2011).  Two charged residues are essential for it's efflux activity (Kim et al. 2016). AlaE is the physiologically most relevant exporter for L-alanine in E. coli. AlaE forms homo-oligomers, and the GxxxG motif in the TMS4 region plays an essential role in AlaE activity but not in AlaE oligomer formation (Ihara et al. 2022).

Bacteria

AlaE of E. coli (A8ANM6)

 
2.A.104.1.2

AlaE homologue of 149aas and 4 TMSs.  There is a duplicated 2 TMS repeat unit, and immediately following both TMSs 2 and 4, there is a conserved motif, RPYG-W found in both halves of the protein at residue numbers 55 and 122 respectively.  Thus, AlaE homologues arose by an intergenic duplication event.

Proteobacteria

AlaE homologue of Pelagibacterium halotolerans (G4R961)

 
Examples:

TC#NameOrganismal TypeExample
2.A.104.2.1

Hypothetical protein (77aas; 2 TMSs). Resembles residues 72-149 (second half) of AlaE.  Could be a fragment of the full length protein.

Archaea

HP of an uncultured crenarchaeote (H5SVY7)

 
Examples:

TC#NameOrganismal TypeExample
2.A.104.3.1

AlaE homologue of 159 aas and 3 or 4 TMSs (KKS95321.1)

Giovannonibacteria

AlaE of Parcubacteria (Giovannonibacteria) bacterium (KKS95321.1)

 
2.A.104.3.2

AlaE homologue of 150 aas and 4 TMSs (KKP64473.1).

Paracubacteria

AlaE of Parcubacteria (Nomurabacteria) bacterium GW2011_GWF2_35_12
(KKP64473.1)