8.A.159.  The MARCH Ubiquitin Ligase (MARCH) Family

Membrane-associated RING-cysteine-histidine (CH) (MARCH) ubiquitin ligases belong to a RING finger domain E3 ligases family. Eleven members have been found in the MARCH family, which are MARCH 1 to 11. The members of the MARCH family are widely distributed and involve in a variety of cellular functions, including regulation of the immune system, transmembrane transport of proteins, protein stability, endoplasmic reticulum-related degradation, and endosome protein transport. Several studies have shown that MARCH affects viral replication through various mechanisms by regulating the activity of signaling molecules and their expression in the antiviral innate immune responses. The complex roles of MARCH ligases in the antiviral innate immune signaling pathway and its impact on viral replication in host immune defense systems have been reviewed (Zheng 2021).


 

References:

Bartee, E., M. Mansouri, B.T. Hovey Nerenberg, K. Gouveia, and K. Früh. (2004). Downregulation of major histocompatibility complex class I by human ubiquitin ligases related to viral immune evasion proteins. J. Virol. 78: 1109-1120.

Botsch, J.J., R. Junker, M. Sorgenfrei, P.P. Ogger, L. Stier, S. von Gronau, P.J. Murray, M.A. Seeger, B.A. Schulman, and B. Bräuning. (2024). Doa10/MARCH6 architecture interconnects E3 ligase activity with lipid-binding transmembrane channel to regulate SQLE. Nat Commun 15: 410.

De Gassart, A., V. Camosseto, J. Thibodeau, M. Ceppi, N. Catalan, P. Pierre, and E. Gatti. (2008). MHC class II stabilization at the surface of human dendritic cells is the result of maturation-dependent MARCH I down-regulation. Proc. Natl. Acad. Sci. USA 105: 3491-3496.

Hassink, G., M. Kikkert, S. van Voorden, S.J. Lee, R. Spaapen, T. van Laar, C.S. Coleman, E. Bartee, K. Früh, V. Chau, and E. Wiertz. (2005). TEB4 is a C4HC3 RING finger-containing ubiquitin ligase of the endoplasmic reticulum. Biochem. J. 388: 647-655.

Lapaque, N., M. Jahnke, J. Trowsdale, and A.P. Kelly. (2009). The HLA-DRalpha chain is modified by polyubiquitination. J. Biol. Chem. 284: 7007-7016.

Nakamura, N., H. Fukuda, A. Kato, and S. Hirose. (2005). MARCH-II is a syntaxin-6-binding protein involved in endosomal trafficking. Mol. Biol. Cell 16: 1696-1710.

Trenker, R., X. Wu, J.V. Nguyen, S. Wilcox, A.F. Rubin, M.E. Call, and M.J. Call. (2021). Human and viral membrane-associated E3 ubiquitin ligases MARCH1 and MIR2 recognize different features of CD86 to downregulate surface expression. J. Biol. Chem. 297: 100900.

Zavacki, A.M., R. Arrojo E Drigo, B.C. Freitas, M. Chung, J.W. Harney, P. Egri, G. Wittmann, C. Fekete, B. Gereben, and A.C. Bianco. (2009). The E3 ubiquitin ligase TEB4 mediates degradation of type 2 iodothyronine deiodinase. Mol. Cell Biol. 29: 5339-5347.

Zelcer, N., L.J. Sharpe, A. Loregger, I. Kristiana, E.C. Cook, L. Phan, J. Stevenson, and A.J. Brown. (2014). The E3 ubiquitin ligase MARCH6 degrades squalene monooxygenase and affects 3-hydroxy-3-methyl-glutaryl coenzyme A reductase and the cholesterol synthesis pathway. Mol. Cell Biol. 34: 1262-1270.

Zheng, C. (2021). The emerging roles of the MARCH ligases in antiviral innate immunity. Int J Biol Macromol 171: 423-427. [Epub: Ahead of Print]

Examples:

TC#NameOrganismal TypeExample
8.A.159.1.1

MARCH1 (MARCHF1; RNF171) of 189 aas and 2 TMSs near, but not at, the C-terninus. It is an E3 ubiquitin-protein ligase that mediates ubiquitination of the transferrin recpeotor (TFRC), CD86, FAS and MHC class II proteins, such as HLA-DR alpha and beta, and promotes their subsequent endocytosis and sorting to lysosomes via multivesicular bodies (Lapaque et al. 2009). By constitutively ubiquitinating MHC class II proteins in immature dendritic cells, it down-regulates their cell surface localizations, thus sequestering them in the intracellular endosomal system (De Gassart et al. 2008). It, and its orthologs, play roles in antiviral innate immunity (Zheng 2021) (see family description).

MARCH1 of Homo sapiens

 
8.A.159.1.10

MIR2 (K5) of human herpesvirus 8 type P (isolate GK18) (HHV-8) (Kaposi's sarcoma-associated herpesvirus). E3 ubiquitin-protein ligase promotes ubiquitination and subsequent degradation of host MHC-I, CD86, ICAM1 and CD1D molecules, to prevent lysis of infected cells by cytotoxic T-lymphocytes and NK cell. It binds target molecules through transmembrane interactions. Different features of CD86 to downregulate surface expression are responsible for binding (Trenker et al. 2021).

 

MIR2 of Herpies viruses

 
8.A.159.1.11

The E3 ubiquitin-protein ligase of 910 aas and 15 TMSs in a 3 + 6 + 6 TMS arrangement.  The last two 6 TMS units are probably duplicates of each other.  The ligase promotes 'Lys-48'-linked ubiquitination of target proteins, leading to their proteasomal degradation (Hassink et al. 2005).

E3 ubiquitin:protein liganse of Homo sapiens

 
8.A.159.1.2

MARCH6 of 910 aas and ~15 TMSs in a 3 + 6 + 6 TMS arrangement. It is a E3 ubiquitin-protein ligase that promotes 'Lys-48'-linked ubiquitination of target proteins, leading to their proteasomal degradation (Hassink et al. 2005). It promotes ubiquitination of DIO2, leading to its degradation (Zavacki et al. 2009) as well as of SQLE, leading to its degradation (Zelcer et al. 2014). E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates. It may cooperate with UBE2G1 (Hassink et al. 2005). Some members of TC family 3.A.16 (i.e., 3.A.16.1.2 and 1.5) utilize homologues as part of a multicomponent system.  Doa10/MARCH6 architecture interconnects E3 ligase activity with lipid-binding transmembrane channel to regulate SQLE (Botsch et al. 2024).

MARCH6 of Homo sapiens

 
8.A.159.1.3

MARCH2 (MARCHII) of 246 aas and 2 TMSs, near the C-terminus of the protein. It is an E3 ubiquitin-protein ligase that may mediate ubiquitination of TFRC and CD86, and promote their subsequent endocytosis and sorting to lysosomes via multivesicular bodies (Nakamura et al. 2005). E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates and may be involved in endosomal trafficking through interaction with STX6 (Bartee et al. 2004).

MARCH2 of Homo sapiens

 
8.A.159.1.4

RING finger membrane protein of 1631 aas and 18 TMSs in an apparent 3 + 3 + 5 + 6 TMS arrangement.

RING finger protein of Aspergillus sclerotialis

 
8.A.159.1.6

Uncharacterized protein of 423 aas and 4 C-terminal TMSs.

UP of Gossypium mustelinum

 
8.A.159.1.7

Uncharacterized protein of 629 aas and 3 C-terminal TMSs.

UP of Podila horticola

 
8.A.159.1.8

Uncharacterized protein of 265 aas and 2 C-terminal TMSs.

UP of Drosophila pseudoobscura

 
8.A.159.1.9

MARCH3, RNF173, MARCHF3, of 253 aas and 2 TMSs, close to each other and near the C-terminus of the protein.

MARCH3 of Homo sapiens

 
Examples:

TC#NameOrganismal TypeExample
8.A.159.2.1

Uncharacterized protein of 1102 aas and up to 11 TMSs, possibly in a 5 + 6 TMS arrangement.

UP of Leishmania guyanensis

 
8.A.159.2.2

E3 ubiquitin-protein ligase, MARCH7 isoform X5, of 862 aas and possibly 3 C-terminal TMSs.

Protein liganse of Petromyzon marinus (sea lamprey)

 
Examples:

TC#NameOrganismal TypeExample
8.A.159.3.1

Uncharacterized protein of 260 aas and 2 TMSs (C-terminal).

UP of Citrus sinensis

 
8.A.159.3.2

E3 ubiquitin-protein ligase MARCH2 of 207 aas and 2 C-terminal TMSs.

MARCH2 of Zea mays