9.B.145 The DUF389/PF04087 (DUF389) Family

Members of the DUF389 family are found ubilquitously in all three domains of life.  These proteins vary in size from less than 300 aas to more than 500 aas.  They usually exhibit 6 or 7 putative TMSs.  Their functions are not known.


Examples:

TC#NameOrganismal TypeExample
9.B.145.1.1

Hypothetical protein of 502 TMSs with 7 C-terminal putative TMSs (residues 280 - 502).  All similarly large homologues with sequence similarity throughout their lengths are found in Rhodopirellula species.

Planctomycetes

HP of Rhodopirellula baltica

 
9.B.145.1.2

Hypothetical protein of 644 aas and 6 or 7 TMSs

Lentisphaerae

HP of Lentisphaera araneosa

 
9.B.145.1.3

Hypothetical protein of 463 aas and 6 or 7 TMSs

Euryarchaea

HP of Halogranum salarium

 
9.B.145.1.4

Hypothetical protein of 323 aas and 6 putative TMSs

Actinobacteria

HP of Rhodococcus opacus

 
9.B.145.1.5

Hypothetical protein of 315 aas and 6 putative TMSs

Actinobacteria

HP of Amycolatopis mediterranei

 
9.B.145.1.6

Hypothetical protein of 308 aas and 6-7 TMSs

Actinobacteria

HP of Gordonia effusa

 
Examples:

TC#NameOrganismal TypeExample