9.B.185 The Putative Bacterial Archaeal Holin (BAH) Family

No member of the BAH family has been characterized, but these proteins were retrieved when functionally characterized holin were BLASTED against the NCBI database. They belong to the DUF3054 family. This family may be related to family with TC# 1.E.43.


 

References:

Anderson, L.N., P.K. Koech, A.E. Plymale, E.V. Landorf, A. Konopka, F.R. Collart, M.S. Lipton, M.F. Romine, and A.T. Wright. (2015). Live Cell Discovery of Microbial Vitamin Transport and Enzyme-Cofactor Interactions. ACS Chem Biol. [Epub: Ahead of Print]
Examples:

TC#NameOrganismal TypeExample
9.B.185.1.1

Putative holin of 138 aas and 4 TMSs.  Belongs to the DUF3054 family.

Euryarchaea

Putative holin of Natrinema pallidum

 
9.B.185.1.2

Putative holin of 138 aas and 4 TMSs; a member of the DUF3054 family

Archaea

Putative holin of Haloferax volcanii (Halobacterium volcanii)

 
9.B.185.1.3

Putative holin of 125 aas and 4 TMSs

Actinobacteria

Putative holin of Rhodococcus equi

 
9.B.185.1.4

Putative holin of 258 aas and 4 TMSs.

Plants

Putative holin of Arabidopsis thaliana

 
9.B.185.1.5

Putative holin of 139 aas and 4 TMSs

Chloroflexi

Putative holin of Chloroflexus aggregans

 
9.B.185.1.6

Uncharacterized protein of 138 aas and 4 TMSs.

Actinobacteria

UP of Micrococcus luteus (Micrococcus lysodeikticus)

 
9.B.185.1.7

Uncharacterized protein of 138 aas and 4 TMSs.  The gene is adjacent to two genes enciding a riboflavin uptake porter of the ABC type (Anderson et al. 2015).

UP of Thermobaculum terrenum