9.B.191 The Endoplasmic Reticulum Retention Receptor (KDELR) Family 

The endoplasmic reticulum (ER)-Golgi system has been studied using biochemical, genetic, electron and light microscopic techniques leading to an understanding of many aspects of trafficking from the ER to the Golgi apparatus (Murshid and Presley 2004). This includes some of the signals and mechanisms for selective retention and retrieval of ER resident proteins and export of cargo proteins. Proteins that leave the ER emerge in 'export complexes' or ER 'exit sites' and accumulate in pleiomorphic transport carriers referred to as VTCs or intermediate compartments. These structures then transit from the ER to the Golgi apparatus along microtubules using the dynein/dynactin motor and fuse with the cis cisterna of the Golgi apparatus. Many proteins (including vSNAREs, ERGIC53/p58 and the KDEL receptor) must cycle back to the ER from pre-Golgi intermediates or the Golgi. Murshid and Presley 2004 considered a   model suggesting that this cycling occurs via 50-nm COPI-coated vesicles and in vivo evidence that suggests  that retrograde trafficking may occur via tubular structures. Intracellular membrane transport involves the coordinated engagement of a series of organelles and molecular machineries that ensure that proteins are delivered to their correct cellular locations.

Due to its central position in the secretory pathway and to the large amounts of signaling molecules associated with it, the Golgi complex plays a role in this regulation. The generation of autonomous signaling by the Golgi complex in response to the arrival of cargo from the endoplasmic reticulum (ER) allows that cargo moving from the ER to the Golgi activates a series of signaling pathways.  This regulatory mechanism is called the Golgi control system (Cancino et al. 2013). A key player in this control system is the KDEL receptor, which  retrieves chaperones back to the endoplasmic reticulum and behaves as a signaling receptor. The KDEL receptor regulates pathways involved in the maintenance of the homeostatic transport apparatus, in particular, of the Golgi complex.

The KDELR determines the specificity of the luminal ER protein retention system and is required for normal vesicular traffic through the Golgi as well as retreval from the Golgi back to the ER. Retrieval of ER luminal proteins from the Golgi is possible via the pH-dependent recognition of a carboxyl-terminal Lys-Asp-Glu-Leu (KDEL) signal in the substrate protein by the KDEL receptor. The crystal structures of the chicken KDEL receptor in the apo ER state and the KDEL-bound Golgi state have been solved (Bräuer et al. 2019). They show a transporter-like architecture that undergoes conformational changes upon KDEL binding with a pH-dependent interaction network crucial for recognition of the carboxyl terminus of the KDEL signal in the target protein. The structures explain how these features create a pH-dependent retrieval system in the secretory pathway (Bräuer et al. 2019).

KDELRs are ubiquitous seven-transmembrane domain proteins encoded by three mammalian genes. They bind to and retro-transport endoplasmic reticulum (ER)-resident proteins with a C-terminal Lys-Asp-Glu-Leu (KDEL) sequence or variants thereof (Cela et al. 2022). In doing this, KDELRs participate in the ER quality control of newly synthesized proteins and the unfolded protein response. The binding of KDEL proteins to KDELRs initiate signaling cascades involving three alpha subunits of heterotrimeric G proteins, Src family kinases, protein kinases A (PKAs), and mitogen-activated protein kinases (MAPKs). These signaling pathways coordinate membrane trafficking flows between secretory compartments and control the degradation of the extracellular matrix (ECM), an important step in cancer progression (Cela et al. 2022).

 



This family belongs to the Transporter-Opsin-G protein-coupled receptor (TOG) Superfamily.

 

References:

Bräuer, P., J.L. Parker, A. Gerondopoulos, I. Zimmermann, M.A. Seeger, F.A. Barr, and S. Newstead. (2019). Structural basis for pH-dependent retrieval of ER proteins from the Golgi by the KDEL receptor. Science 363: 1103-1107.

Cancino, J., J.E. Jung, and A. Luini. (2013). Regulation of Golgi signaling and trafficking by the KDEL receptor. Histochem Cell Biol 140: 395-405.

Cela, I., B. Dufrusine, C. Rossi, A. Luini, V. De Laurenzi, L. Federici, and M. Sallese. (2022). KDEL Receptors: Pathophysiological Functions, Therapeutic Options, and Biotechnological Opportunities. Biomedicines 10:.

Li, B., X. Zhang, Y. Lu, L. Zhao, Y. Guo, S. Guo, Q. Kang, J. Liu, L. Dai, L. Zhang, D. Fan, and Z. Ji. (2021). Protein 4.1R affects photodynamic therapy for B16 melanoma by regulating the transport of 5-aminolevulinic acid. Exp Cell Res 399: 112465.

Lujan, P. and F. Campelo. (2021). Should I stay or should I go? Golgi membrane spatial organization for protein sorting and retention. Arch Biochem Biophys 707: 108921.

Murshid, A. and J.F. Presley. (2004). ER-to-Golgi transport and cytoskeletal interactions in animal cells. Cell Mol Life Sci 61: 133-145.

Examples:

TC#NameOrganismal TypeExample
9.B.191.1.1

Putative ER lumen protein-retaining receptor of 215 aas and 7 TMSs.

Fungi

ER lumen protein-retaining receptor of Chaetomium globosum

 
9.B.191.1.10

ER lumen protein-retaining receptor, Erd-2.1, ERD-2.1 or Erd2.1, of 213 aas and 7 TMSs. It is required for the retention of luminal endoplasmic reticulum proteins and determines the specificity of the system. it is also required for normal vesicular trafficing through the Golgi. It is 67% identical to the human receptor with TC# 9.B.191.1.5. It catalyzes COPI-dependent Golgi-to-ER retrograde traffic. There seems to be an interaction between the vesicular acetylcholine transporter and ERD2 receptor.

 

Erd-2.1 of Caenorhabditis elegans

 
9.B.191.1.2

The ER-retrevial receptor of 217 aas and 7 TMSs, Ter1.

Alveolata (ciliates)

Ter1 of Tetrahymena thermophila

 
9.B.191.1.3

Uncharacterized protein of 262 aas and 8 TMSs

Stramenopiles

UP of Aphanomyces astac

 
9.B.191.1.4

ER retention receptor, ER_ret_rcpt.protein of 371 aas and 6 or 7 TM

 

Alveolata

ER_ret_rcot of Toxoplasma gondii

 
9.B.191.1.5

KDEL receptor, KDELR of 212 aas and 7 TMSs.  Required for the retention of luminal endoplasmic reticulum resident proteins via vesicular recycling. This receptor recognizes the C-terminal K-D-E-L motif. COPI-coated transport intermediates, either in the form of round vesicles or as tubular processes, mediate retrograde traffic of the KDEL receptor-ligand complexes. Also required for normal vesicular traffic through the Golgi (Giannotta et al. 2015). Intra-Golgi transport as well as the known mechanisms for the retention of Golgi resident proteins and for the sorting and export of transmembrane cargo proteins have been reviewed (Lujan and Campelo 2021).

 

Animals

KDELR of Homo sapiens

 
9.B.191.1.6

Endoplasmic reticulum retention receptor of 287 aas and 6 TMSs

Alveolata

ER retention receptor of Perkinsus marinus

 
9.B.191.1.7

Putative ER lumen protein retaining receptor protein of 391 aas.

Fungi

ER retention recptor of Eutypa lata (Grapevine dieback disease fungus) (Eutypa armeniacae)

 
9.B.191.1.8

KDEL receptor of 212 aas and 7 TMSs. 84% identical to the human homologue (TC# 9.B.191.1.5). These receptors determine the specificity of the luminal ER protein retention system that are required for normal vesicular traffic through the Golgi as well as retreval from the Golgi back to the ER. Retrieval is possible via the pH-dependent recognition of a carboxyl-terminal Lys-Asp-Glu-Leu (KDEL) signal by the KDEL receptor. The crystal structures of the chicken KDEL receptor in the apo ER state and the KDEL-bound Golgi state have been solved (PDB# 6I6B; Bräuer et al. 2019). They show a transporter-like architecture similar to that observed for SWEET family members that undergoes conformational changes upon KDEL binding with a pH-dependent interaction network crucial for recognition of the carboxyl terminus of the KDEL signal in a target protein (Bräuer et al. 2019).

KDELR of Gallus gallus (Chicken)

 
9.B.191.1.9

Uncharacterized protein of 681 aas and 7 N-terminal TMSs as well as a long C-terminal hydrophilic domain that is homologous to the protein with TC# 1.H.3.3.2.

UP of Perkinsus chesapeaki

 
Examples:

TC#NameOrganismal TypeExample
9.B.191.2.1

Uncharacterized protein of 204 aas and 7 TMSs.

UP of Alteromonadales bacterium TW-7

 
9.B.191.2.2

Uncharacterized protein of 208 aas and 7 TMSs in a 1 + 2 + 2 + 2 TMS arrangement.  This protein shows appreciable sequence similarity with the proteins with TC# 9.B.191.1.7 and 9.B.191.1.9 as well as high similarity with 1.B.191.2.1.

UP of Pseudoalteromonas citrea