9.B.361.  The Small 4 TMS Protein (S4P) Family 

Most of the proteins of this family are of about 130 - 180 aas with 4 TMSs in a 3 + 1 TMS arrangement.  However, some have only two TMSs corresponding to TMSs 1 & 2 or 3 & 4 of the 4 TMS proteins.  5 TMS homologues are also present in the family. Some members of this family have been annotated as 'hydrogenase'.


Examples:

TC#NameOrganismal TypeExample
9.B.361.1.1

The Uncharacterized protein of 172 aas and 4 TMSs

UP of Calothrix elsteri

 
9.B.361.1.2

Uncharacterized protein of 152 aas and 4 TMSs.

UP of Serendipita vermifera (Sebacina vermifera)

 
Examples:

TC#NameOrganismal TypeExample
9.B.361.2.1

Uncharacterized protein of 144 aas and 4 TMSs in a 3 + 1 TMS arrangement.

UP of Pseudoalteromonas rubra

 
9.B.361.2.2

Uncharacterized protein of 146 aas and 4 TMSs in a 3 + 1 TMS arrangement.

UP of Chrysiogenales bacterium (marine sediment metagenome)

  
 
9.B.361.2.3

Uncharacterized protein of 145 aas and 4 TMSs in a 3 + 1 TMS arrangement

UP of Mycolicibacter longobardus

 
Examples:

TC#NameOrganismal TypeExample
9.B.361.3.1

Uncharacterized protein of 141 aas and 4 equally spaced TMSs

UP of Deltaproteobacteria bacterium (soil metagenome)

 
9.B.361.3.2

Uncharacterized protein of 141 aas and 4 TMSs.

UP of Candidatus Rokubacteria bacterium (soil metagenome)

 
9.B.361.3.3

Uncharacterized protein of 148 aas and 4 TMSs

UP of Zhongshania aliphaticivorans

 
Examples:

TC#NameOrganismal TypeExample
9.B.361.4.1

Uncharacterized protein of 86 aas and 2 TMSs.  This sequence is similar to TMSs 3 and 4 of a 4 TMS member and could be a fragment.

UP of Mycobacterium tuberculosis

 
9.B.361.4.2

Uncharacterized protein of 177 aas and 5 TMSs

UP of Polynucleobacter asymbioticus

 
9.B.361.4.3

Uncharacterized protein of 83 aas and 2 TMSs

UP of Solemya velum gill symbiont

 
9.B.361.4.4

Uncharacterized protein of 93 aas and 2 TMSs, corresponding to TMSs 1 - 2 in the $ TMS proteins

UP of Stanieria sp.