9.B.44 The YiaA-YiaB (YiaAB) Family The YiaAB family (COG4682; 4 TMSs and COG4298; 2 TMSs) includes two paralogous 4 TMS proteins in E. coli which map adjacent to each other, YiaA (145 aas) and YiaB (117 aas). The topology of YiaB is established with both the N- and C-termini in the cytoplasm (Drew et al., 2002). This protein is apparently present only in E. coli and Shigella. In both YiaA and YiaB, peaks 1 and 3 are much more hydrophobic than peaks 2 and 4, and the first halves are homologous to the second halves. All homologues are from bacteria. No functional data are available for these proteins, and many organisms that possess homologues do not necessarily have two. Many bacteria have only YiaA, not a YiaB. Many bacteria have 2 TMS homologues. For example, Deinococcus radiodurans has a 95 aa homologue (AAF10670) which is predicted to have 2 TMSs, and it is the equivalent of the first half of YiaA. Another homologue in Herpetosiphon aurantiacus (94 aas; EAU15084) has 2 TMSs with a C-terminal hydrophilic extension. Another homologue from Xanthomonas oryzae (gi#58583127) is of 227 aas, has 2 TMS (COG4682) domains linked to a VgrG hydrophilic domain of unknown function. The VgrG domain is found in many bacterial proteins.
References:
YiaAB homologue of 187 aas and 4 TMSs
YiaAB-like protein of Comamonas testosteroni
YiaAB two helix domain-containing protein of 94 aas and 2 TMSs.
YiaAB-like protein of Anabaena cylindrica
Uncharacterized protein of 84 aas and 2 TMSs
UP of Lactococcus lactis
Energy-converting hydrogenase A subunit I, EhaI or DUF788 domain-containing protein, of 71 aas and 2 TMSs
EhaI of Methanobrevibacter ruminantium (Methanobacterium ruminantium)
Uncharacterized protein of 71 aas and 2 TMSs.
UP of Methanobrevibacter smithii