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Accession Number: | P98161 |
Protein Name: | PKD1 |
Length: | 4303 |
Molecular Weight: | 462529.00 |
Species: | Homo sapiens (Human) [9606] |
Number of TMSs: | 11 |
Location1 / Topology2 / Orientation3: | Membrane1 / Multi-pass membrane protein2 |
Substrate | inorganic cation, calcium(2+), sodium(1+), potassium(1+) |
Cross database links:
RefSeq: | NP_000287.3 NP_001009944.2 |
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Entrez Gene ID: | 5310 |
Pfam: | PF01825 PF00059 PF01462 PF00801 PF08016 PF01477 PF02010 PF01822 |
OMIM: |
173900 phenotype 601313 gene+phenotype |
KEGG: | hsa:5310 |
Gene Ontology
GO:0005887
C:integral to plasma membrane
GO:0005515
F:protein binding
GO:0005529
F:sugar binding
GO:0007161
P:calcium-independent cell-matrix adhesion
GO:0007156
P:homophilic cell adhesion
GO:0007218
P:neuropeptide signaling pathway
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References (40)[1] “Polycystic kidney disease: the complete structure of the PKD1 gene and its protein.” Gluecksmann-Kuis M.A.et.al. 7736581 [2] “The polycystic kidney disease 1 (PKD1) gene encodes a novel protein with multiple cell recognition domains.” Hughes J.et.al. 7663510 [3] “The sequence and analysis of duplication-rich human chromosome 16.” Martin J.et.al. 15616553 [4] “The polycystic kidney disease 1 gene encodes a 14 kb transcript and lies within a duplicated region on chromosome 16.” Ward C.J.et.al. 8004675 [5] “” Ward C.J.et.al. 8069919 [6] “Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.” Olsen J.V.et.al. 17081983 [7] “The structure of a PKD domain from polycystin-1: implications for polycystic kidney disease.” Bycroft M.et.al. 9889186 [8] “Polycystin channels and kidney disease.” Stayner C.et.al. 11698076 [9] “Screening the 3' region of the polycystic kidney disease 1 (PKD1) gene reveals six novel mutations.” Peral B.et.al. 8554072 [10] “Identification of mutations in the duplicated region of the polycystic kidney disease 1 gene (PKD1) by a novel approach.” Peral B.et.al. 9199561 [11] “New amino acid polymorphism, Ala/Val4058, in exon 45 of the polycystic kidney disease 1 gene: evolution of alleles.” Constantinides R.et.al. 9150733 [12] “An unusual pattern of mutation in the duplicated portion of PKD1 is revealed by use of a novel strategy for mutation detection.” Watnick T.J.et.al. 9285784 [13] “Three novel mutations of the PKD1 gene in Italian families with autosomal dominant polycystic kidney disease.” Turco A.E.et.al. 9259200 [14] “Novel and recurrent mutations in the PKD1 (polycystic kidney disease) gene.” Daniells C.et.al. 9521593 [15] “Loss of heterozygosity in polycystic kidney disease with a missense mutation in the repeated region of PKD1.” Koptides M.et.al. 9921908 [16] “Identification of mutations in the repeated part of the autosomal dominant polycystic kidney disease type 1 gene, PKD1, by long-range PCR.” Thomas R.L.et.al. 10364515 [17] “Mutation detection of PKD1 identifies a novel mutation common to three families with aneurysms and/or very-early-onset disease.” Watnick T.et.al. 10577909 [18] “DGGE screening of PKD1 gene reveals novel mutations in a large cohort of 146 unrelated patients.” Perrichot R.A.et.al. 10987650 [19] “Novel mutations in the 3 region of the polycystic kidney disease 1 (PKD1) gene.” Afzal A.R.et.al. 10647901 [20] “Mutational analysis within the 3' region of the PKD1 gene.” Badenas C.et.al. 10200984 [21] “Novel mutations in the duplicated region of PKD1 gene.” Perrichot R.et.al. 10854095 [22] “Novel mutations in the duplicated region of the polycystic kidney disease 1 (PKD1) gene provides supporting evidence for gene conversion.” Afzal A.R.et.al. 11216660 [23] “Screening of the PKD1 duplicated region reveals multiple single nucleotide polymorphisms and a de novo mutation in Hellenic polycystic kidney disease families.” Koptides M.et.al. 10923040 [24] “Novel splicing and missense mutations in autosomal dominant polycystic kidney disease 1 (PKD1) gene: expression of mutated genes.” Aguiari G.et.al. 11058904 [25] “Thirteen novel mutations of the replicated region of PKD1 in an Asian population.” Phakdeekitcharoen B.et.al. 11012875 [26] “Novel mutations of the PKD1 gene in Korean patients with autosomal dominant polycystic kidney disease.” Kim U.K.et.al. 10729710 [27] “Mutation analysis of the entire PKD1 gene: genetic and diagnostic implications.” Rossetti S.et.al. 11115377 [28] “Novel PKD1 deletions and missense variants in a cohort of Hellenic polycystic kidney disease families.” Bouba I.et.al. 11571556 [29] “Mutation analysis of the entire replicated portion of PKD1 using genomic DNA samples.” Phakdeekitcharoen B.et.al. 11316854 [30] “Mutations of the PKD1 gene among Japanese autosomal dominant polycystic kidney disease patients, including one heterozygous mutation identified in members of the same family.” Mizoguchi M.et.al. 11558899 [31] “Mutational analysis within the 3' region of the PKD1 gene in Japanese families.” Tsuchiya K.et.al. 11691639 [32] “Three novel mutations of the PKD1 gene in Korean patients with autosomal dominant polycystic kidney disease.” Eo H.-S.et.al. 12220456 [33] “Mutation detection in the duplicated region of the polycystic kidney disease 1 (PKD1) gene in PKD1-linked Australian families.” McCluskey M.et.al. 11857740 [34] “Mutation analysis in PKD1 of Japanese autosomal dominant polycystic kidney disease patients.” Inoue S.et.al. 12007219 [35] “Mutation screening of the PKD1 transcript by RT-PCR.” Burtey S.et.al. 12070253 [36] “A complete mutation screen of the ADPKD genes by DHPLC.” Rossetti S.et.al. 11967008 | |
Structure: | |
External Searches:
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Analyze:
Predict TMSs (Predict number of transmembrane segments) | ||||
FASTA formatted sequence |
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1: MPPAAPARLA LALGLGLWLG ALAGGPGRGC GPCEPPCLCG PAPGAACRVN CSGRGLRTLG 61: PALRIPADAT ALDVSHNLLR ALDVGLLANL SALAELDISN NKISTLEEGI FANLFNLSEI 121: NLSGNPFECD CGLAWLPRWA EEQQVRVVQP EAATCAGPGS LAGQPLLGIP LLDSGCGEEY 181: VACLPDNSSG TVAAVSFSAA HEGLLQPEAC SAFCFSTGQG LAALSEQGWC LCGAAQPSSA 241: SFACLSLCSG PPPPPAPTCR GPTLLQHVFP ASPGATLVGP HGPLASGQLA AFHIAAPLPV 301: TATRWDFGDG SAEVDAAGPA ASHRYVLPGR YHVTAVLALG AGSALLGTDV QVEAAPAALE 361: LVCPSSVQSD ESLDLSIQNR GGSGLEAAYS IVALGEEPAR AVHPLCPSDT EIFPGNGHCY 421: RLVVEKAAWL QAQEQCQAWA GAALAMVDSP AVQRFLVSRV TRSLDVWIGF STVQGVEVGP 481: APQGEAFSLE SCQNWLPGEP HPATAEHCVR LGPTGWCNTD LCSAPHSYVC ELQPGGPVQD 541: AENLLVGAPS GDLQGPLTPL AQQDGLSAPH EPVEVMVFPG LRLSREAFLT TAEFGTQELR 601: RPAQLRLQVY RLLSTAGTPE NGSEPESRSP DNRTQLAPAC MPGGRWCPGA NICLPLDASC 661: HPQACANGCT SGPGLPGAPY ALWREFLFSV PAGPPAQYSV TLHGQDVLML PGDLVGLQHD 721: AGPGALLHCS PAPGHPGPRA PYLSANASSW LPHLPAQLEG TWACPACALR LLAATEQLTV 781: LLGLRPNPGL RLPGRYEVRA EVGNGVSRHN LSCSFDVVSP VAGLRVIYPA PRDGRLYVPT 841: NGSALVLQVD SGANATATAR WPGGSVSARF ENVCPALVAT FVPGCPWETN DTLFSVVALP 901: WLSEGEHVVD VVVENSASRA NLSLRVTAEE PICGLRATPS PEARVLQGVL VRYSPVVEAG 961: SDMVFRWTIN DKQSLTFQNV VFNVIYQSAA VFKLSLTASN HVSNVTVNYN VTVERMNRMQ 1021: GLQVSTVPAV LSPNATLALT AGVLVDSAVE VAFLWTFGDG EQALHQFQPP YNESFPVPDP 1081: SVAQVLVEHN VMHTYAAPGE YLLTVLASNA FENLTQQVPV SVRASLPSVA VGVSDGVLVA 1141: GRPVTFYPHP LPSPGGVLYT WDFGDGSPVL TQSQPAANHT YASRGTYHVR LEVNNTVSGA 1201: AAQADVRVFE ELRGLSVDMS LAVEQGAPVV VSAAVQTGDN ITWTFDMGDG TVLSGPEATV 1261: EHVYLRAQNC TVTVGAASPA GHLARSLHVL VFVLEVLRVE PAACIPTQPD ARLTAYVTGN 1321: PAHYLFDWTF GDGSSNTTVR GCPTVTHNFT RSGTFPLALV LSSRVNRAHY FTSICVEPEV 1381: GNVTLQPERQ FVQLGDEAWL VACAWPPFPY RYTWDFGTEE AAPTRARGPE VTFIYRDPGS 1441: YLVTVTASNN ISAANDSALV EVQEPVLVTS IKVNGSLGLE LQQPYLFSAV GRGRPASYLW 1501: DLGDGGWLEG PEVTHAYNST GDFTVRVAGW NEVSRSEAWL NVTVKRRVRG LVVNASRTVV 1561: PLNGSVSFST SLEAGSDVRY SWVLCDRCTP IPGGPTISYT FRSVGTFNII VTAENEVGSA 1621: QDSIFVYVLQ LIEGLQVVGG GRYFPTNHTV QLQAVVRDGT NVSYSWTAWR DRGPALAGSG 1681: KGFSLTVLEA GTYHVQLRAT NMLGSAWADC TMDFVEPVGW LMVAASPNPA AVNTSVTLSA 1741: ELAGGSGVVY TWSLEEGLSW ETSEPFTTHS FPTPGLHLVT MTAGNPLGSA NATVEVDVQV 1801: PVSGLSIRAS EPGGSFVAAG SSVPFWGQLA TGTNVSWCWA VPGGSSKRGP HVTMVFPDAG 1861: TFSIRLNASN AVSWVSATYN LTAEEPIVGL VLWASSKVVA PGQLVHFQIL LAAGSAVTFR 1921: LQVGGANPEV LPGPRFSHSF PRVGDHVVSV RGKNHVSWAQ AQVRIVVLEA VSGLQVPNCC 1981: EPGIATGTER NFTARVQRGS RVAYAWYFSL QKVQGDSLVI LSGRDVTYTP VAAGLLEIQV 2041: RAFNALGSEN RTLVLEVQDA VQYVALQSGP CFTNRSAQFE AATSPSPRRV AYHWDFGDGS 2101: PGQDTDEPRA EHSYLRPGDY RVQVNASNLV SFFVAQATVT VQVLACREPE VDVVLPLQVL 2161: MRRSQRNYLE AHVDLRDCVT YQTEYRWEVY RTASCQRPGR PARVALPGVD VSRPRLVLPR 2221: LALPVGHYCF VFVVSFGDTP LTQSIQANVT VAPERLVPII EGGSYRVWSD TRDLVLDGSE 2281: SYDPNLEDGD QTPLSFHWAC VASTQREAGG CALNFGPRGS STVTIPRERL AAGVEYTFSL 2341: TVWKAGRKEE ATNQTVLIRS GRVPIVSLEC VSCKAQAVYE VSRSSYVYLE GRCLNCSSGS 2401: KRGRWAARTF SNKTLVLDET TTSTGSAGMR LVLRRGVLRD GEGYTFTLTV LGRSGEEEGC 2461: ASIRLSPNRP PLGGSCRLFP LGAVHALTTK VHFECTGWHD AEDAGAPLVY ALLLRRCRQG 2521: HCEEFCVYKG SLSSYGAVLP PGFRPHFEVG LAVVVQDQLG AAVVALNRSL AITLPEPNGS 2581: ATGLTVWLHG LTASVLPGLL RQADPQHVIE YSLALVTVLN EYERALDVAA EPKHERQHRA 2641: QIRKNITETL VSLRVHTVDD IQQIAAALAQ CMGPSRELVC RSCLKQTLHK LEAMMLILQA 2701: ETTAGTVTPT AIGDSILNIT GDLIHLASSD VRAPQPSELG AESPSRMVAS QAYNLTSALM 2761: RILMRSRVLN EEPLTLAGEE IVAQGKRSDP RSLLCYGGAP GPGCHFSIPE AFSGALANLS 2821: DVVQLIFLVD SNPFPFGYIS NYTVSTKVAS MAFQTQAGAQ IPIERLASER AITVKVPNNS 2881: DWAARGHRSS ANSANSVVVQ PQASVGAVVT LDSSNPAAGL HLQLNYTLLD GHYLSEEPEP 2941: YLAVYLHSEP RPNEHNCSAS RRIRPESLQG ADHRPYTFFI SPGSRDPAGS YHLNLSSHFR 3001: WSALQVSVGL YTSLCQYFSE EDMVWRTEGL LPLEETSPRQ AVCLTRHLTA FGASLFVPPS 3061: HVRFVFPEPT ADVNYIVMLT CAVCLVTYMV MAAILHKLDQ LDASRGRAIP FCGQRGRFKY 3121: EILVKTGWGR GSGTTAHVGI MLYGVDSRSG HRHLDGDRAF HRNSLDIFRI ATPHSLGSVW 3181: KIRVWHDNKG LSPAWFLQHV IVRDLQTARS AFFLVNDWLS VETEANGGLV EKEVLAASDA 3241: ALLRFRRLLV AELQRGFFDK HIWLSIWDRP PRSRFTRIQR ATCCVLLICL FLGANAVWYG 3301: AVGDSAYSTG HVSRLSPLSV DTVAVGLVSS VVVYPVYLAI LFLFRMSRSK VAGSPSPTPA 3361: GQQVLDIDSC LDSSVLDSSF LTFSGLHAEQ AFVGQMKSDL FLDDSKSLVC WPSGEGTLSW 3421: PDLLSDPSIV GSNLRQLARG QAGHGLGPEE DGFSLASPYS PAKSFSASDE DLIQQVLAEG 3481: VSSPAPTQDT HMETDLLSSL SSTPGEKTET LALQRLGELG PPSPGLNWEQ PQAARLSRTG 3541: LVEGLRKRLL PAWCASLAHG LSLLLVAVAV AVSGWVGASF PPGVSVAWLL SSSASFLASF 3601: LGWEPLKVLL EALYFSLVAK RLHPDEDDTL VESPAVTPVS ARVPRVRPPH GFALFLAKEE 3661: ARKVKRLHGM LRSLLVYMLF LLVTLLASYG DASCHGHAYR LQSAIKQELH SRAFLAITRS 3721: EELWPWMAHV LLPYVHGNQS SPELGPPRLR QVRLQEALYP DPPGPRVHTC SAAGGFSTSD 3781: YDVGWESPHN GSGTWAYSAP DLLGAWSWGS CAVYDSGGYV QELGLSLEES RDRLRFLQLH 3841: NWLDNRSRAV FLELTRYSPA VGLHAAVTLR LEFPAAGRAL AALSVRPFAL RRLSAGLSLP 3901: LLTSVCLLLF AVHFAVAEAR TWHREGRWRV LRLGAWARWL LVALTAATAL VRLAQLGAAD 3961: RQWTRFVRGR PRRFTSFDQV AQLSSAARGL AASLLFLLLV KAAQQLRFVR QWSVFGKTLC 4021: RALPELLGVT LGLVVLGVAY AQLAILLVSS CVDSLWSVAQ ALLVLCPGTG LSTLCPAESW 4081: HLSPLLCVGL WALRLWGALR LGAVILRWRY HALRGELYRP AWEPQDYEMV ELFLRRLRLW 4141: MGLSKVKEFR HKVRFEGMEP LPSRSSRGSK VSPDVPPPSA GSDASHPSTS SSQLDGLSVS 4201: LGRLGTRCEP EPSRLQAVFE ALLTQFDRLN QATEDVYQLE QQLHSLQGRR SSRAPAGSSR 4261: GPSPGLRPAL PSRLARASRG VDLATGPSRT PLRAKNKVHP SST