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1.A.10.1.6
The heteromeric monovalent cation/Ca2+ channel/glutamate (NMDA) receptor NMDAR1/NMDAR2A/NMDAR2B/NMDAR2C) (Monyer et al., 1992). Note: NR2B is the same as NR3, GluN2A, GRIN2A or subunit epsilon (Schüler et al., 2008). Mediates voltage- and Mg2+-dependent control of Na+ and Ca2+ permeability (Yang et al., 2010).  Mutations in the subunit, GRIN1, a 1464 aa protein, identified in patients with early-onset epileptic encephalopathy and profound developmental delay, are located in the transmembrane domain and the linker region between the ligand-binding and transmembrane domains (Yuan et al. 2014; Ohba et al. 2015).  Karakas and Furukawa 2014 determined the crystal structure of the heterotetrameric GluN1-GluN2B NMDA receptor ion channel at 4 Å resolution. The receptor is arranged as a dimer of GluN1-GluN2B heterodimers with the twofold symmetry axis running through the entire molecule composed of an amino terminal domain, a ligand-binding domain, and a transmembrane domain.  The GluN2 subunit regulates synaptic trafficking of AMPA in the neonatal mouse brain (Hamada et al. 2014).  GRIN1 and GRIN2A mutations are associated with severe intellectual disability with cortical visual impairment, epilepsy and oculomotor and movement disorders being discriminating phenotypic features (Lemke et al. 2016; Chen et al. 2017).The cryoEM structure of a triheteromeric receptor including GluN1 (glycine binding), GluN2A and GluN2B (both glutamate binding) has been solved with and without a GluN2B allosteric antagonist, Ro 25-6981 (et al. 2017). Ogden et al. 2017 implicated the pre-M1 region in gating, providing insight into how different subunits contribute to gating, and suggesting that mutations in the pre-M1 helix, such as those that cause epilepsy and developmental delays, can compromise neuronal health. The severity of GRIN2A (Glu2A)-related disorders can be predicted based on the positions of the mutations in the encoding gene (Strehlow et al. 2019). Knock-in mice expressing an ethanol-resistant GluN2A NMDA receptor subunit show altered responses to ethanol (Zamudio et al. 2019). Results of McDaniel et al. 2020 revealed the role of the pre-M1 helix in channel gating, implicated the surrounding amino acid environment in this mechanism, and suggested unique subunit-specific contributions of pre-M1 helices to GluN1 and GluN2 gating. The human ortholog is 998.5% identical. An autism-associated mutation in GluN2B prevents NMDA receptor trafficking and interferes with dendrite growth (Sceniak et al. 2019). The binding of calcium-calmodulin to the C-terminus of GluN1 has long range allosteric effects on the extracellular segments of the receptor that may contribute to the calcium-dependent inactivation (Bhatia et al. 2020). GluN1 interacts with PCDH7 (O60245) to regulate dendritic spine morphology and synaptic function (Wang et al. 2020).Pluripotential GluN1 (NMDA NR1) functions in cellular nuclei in pain/nociception (McNearney and Westlund 2023).

Accession Number:Q00959
Protein Name:Glutamate [NMDA] receptor subunit epsilon-1
Length:1464
Molecular Weight:165469.00
Species: [10116]
Number of TMSs:4
Location1 / Topology2 / Orientation3: Cell membrane1 / Multi-pass membrane protein2
Substrate monoatomic monocation, sodium(1+), calcium atom

Cross database links:

RefSeq: NP_036705.3   
Entrez Gene ID: 24409   
Pfam: PF01094    PF00060    PF10565    PF00497   
KEGG: rno:24409   

Gene Ontology

GO:0030054 C:cell junction
GO:0043197 C:dendritic spine
GO:0017146 C:N-methyl-D-aspartate selective glutamate re...
GO:0030288 C:outer membrane-bounded periplasmic space
GO:0045211 C:postsynaptic membrane
GO:0042734 C:presynaptic membrane
GO:0050839 F:cell adhesion molecule binding
GO:0005234 F:extracellular-glutamate-gated ion channel a...
GO:0016595 F:glutamate binding
GO:0004972 F:N-methyl-D-aspartate selective glutamate re...
GO:0042165 F:neurotransmitter binding
GO:0022843 F:voltage-gated cation channel activity
GO:0008270 F:zinc ion binding
GO:0035235 P:ionotropic glutamate receptor signaling pat...
GO:0007613 P:memory
GO:0001508 P:regulation of action potential
GO:0048169 P:regulation of long-term neuronal synaptic p...
GO:0048511 P:rhythmic process

References (10)

[1] “Heteromeric NMDA receptors: molecular and functional distinction of subtypes.”  Monyer H.et.al.   1350383
[2] “Molecular characterization of the family of the N-methyl-D-aspartate receptor subunits.”  Ishii T.et.al.   8428958
[3] “Domain interaction between NMDA receptor subunits and the postsynaptic density protein PSD-95.”  Kornau H.C.et.al.   7569905
[4] “A novel multiple PDZ domain-containing molecule interacting with N-methyl-d-aspartate receptors and neuronal cell adhesion proteins.”  Hirao K.et.al.   9694864
[5] “CIPP, a novel multivalent PDZ domain protein, selectively interacts with Kir4.0 family members, NMDA receptor subunits, neurexins, and neuroligins.”  Kurschner C.et.al.   9647694
[6] “Assembly with the NR1 subunit is required for surface expression of NR3A-containing NMDA receptors.”  Perez-Otano I.et.al.   11160393
[7] “An NMDA receptor signaling complex with protein phosphatase 2A.”  Chan S.F.et.al.   11588171
[8] “Association of NR3A with the N-methyl-D-aspartate receptor NR1 and NR2 subunits.”  Al-Hallaq R.A.et.al.   12391275
[9] “Characterization and comparison of the NR3A subunit of the NMDA receptor in recombinant systems and primary cortical neurons.”  Sasaki Y.F.et.al.   11929923
[10] “Subunit arrangement and function in NMDA receptors.”  Furukawa H.et.al.   16281028
Structure:
2A5S   2A5T   4JWX   4NF4   4NF5   4NF6   4NF8   5DEX   5I56   5I57   [...more]

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FASTA formatted sequence
1:	MGRLGYWTLL VLPALLVWRD PAQNAAAEKG PPALNIAVLL GHSHDVTERE LRNLWGPEQA 
61:	TGLPLDVNVV ALLMNRTDPK SLITHVCDLM SGARIHGLVF GDDTDQEAVA QMLDFISSQT 
121:	FIPILGIHGG ASMIMADKDP TSTFFQFGAS IQQQATVMLK IMQDYDWHVF SLVTTIFPGY 
181:	RDFISFIKTT VDNSFVGWDM QNVITLDTSF EDAKTQVQLK KIHSSVILLY CSKDEAVLIL 
241:	SEARSLGLTG YDFFWIVPSL VSGNTELIPK EFPSGLISVS YDDWDYSLEA RVRDGLGILT 
301:	TAASSMLEKF SYIPEAKASC YGQAEKPETP LHTLHQFMVN VTWDGKDLSF TEEGYQVHPR 
361:	LVVIVLNKDR EWEKVGKWEN QTLSLRHAVW PRYKSFSDCE PDDNHLSIVT LEEAPFVIVE 
421:	DIDPLTETCV RNTVPCRKFV KINNSTNEGM NVKKCCKGFC IDILKKLSRT VKFTYDLYLV 
481:	TNGKHGKKVN NVWNGMIGEV VYQRAVMAVG SLTINEERSE VVDFSVPFVE TGISVMVSRS 
541:	NGTVSPSAFL EPFSASVWVM MFVMLLIVSA IAVFVFEYFS PVGYNRNLAK GKAPHGPSFT 
601:	IGKAIWLLWG LVFNNSVPVQ NPKGTTSKIM VSVWAFFAVI FLASYTANLA AFMIQEEFVD 
661:	QVTGLSDKKF QRPHDYSPPF RFGTVPNGST ERNIRNNYPY MHQYMTRFNQ RGVEDALVSL 
721:	KTGKLDAFIY DAAVLNYKAG RDEGCKLVTI GSGYIFASTG YGIALQKGSP WKRQIDLALL 
781:	QFVGDGEMEE LETLWLTGIC HNEKNEVMSS QLDIDNMAGV FYMLAAAMAL SLITFIWEHL 
841:	FYWKLRFCFT GVCSDRPGLL FSISRGIYSC IHGVHIEEKK KSPDFNLTGS QSNMLKLLRS 
901:	AKNISNMSNM NSSRMDSPKR ATDFIQRGSL IVDMVSDKGN LIYSDNRSFQ GKDSIFGDNM 
961:	NELQTFVANR HKDNLSNYVF QGQHPLTLNE SNPNTVEVAV STESKGNSRP RQLWKKSMES 
1021:	LRQDSLNQNP VSQRDEKTAE NRTHSLKSPR YLPEEVAHSD ISETSSRATC HREPDNNKNH 
1081:	KTKDNFKRSM ASKYPKDCSD VDRTYMKTKA SSPRDKIYTI DGEKEPSFHL DPPQFVENIT 
1141:	LPENVGFPDT YQDHNENFRK GDSTLPMNRN PLHNEDGLPN NDQYKLYAKH FTLKDKGSPH 
1201:	SEGSDRYRQN STHCRSCLSN LPTYSGHFTM RSPFKCDACL RMGNLYDIDE DQMLQETGNP 
1261:	ATREEVYQQD WSQNNALQFQ KNKLRINRQH SYDNILDKPR EIDLSRPSRS ISLKDRERLL 
1321:	EGNLYGSLFS VPSSKLLGNK SSLFPQGLED SKRSKSLLPD HASDNPFLHT YGDDQRLVIG 
1381:	RCPSDPYKHS LPSQAVNDSY LRSSLRSTAS YCSRDSRGHS DVYISEHVMP YAANKNTMYS 
1441:	TPRVLNSCSN RRVYKKMPSI ESDV