TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
9.A.3.1.1 | The PDZ domain-containing SNX27-retromer assembly apparatus together with the retromer subunit, ANKRD50 (Kvainickas et al. 2016). Retromer subunits include VPS26A/B (327 and 336 aas, respectively) (also cargo binding proteins) VPS35 (MEM3; 796 aas) and VPS29 (DC7, DC15; 182 aas). SNX3 (162 aas) and Rab7A (207 aas) mediate recruitment to endosomes, but SNX3 is also a cargo adaptor (McNally and Cullen 2018). Kidins220 deficiency causes ventriculomegaly via SNX27-retromer-dependent AQP4 degradation (Del Puerto et al. 2021). VPS35 and alpha-Synuclein fail to interact to modulate neurodegeneration in rodent models of Parkinson's disease (Chen et al. 2023). | Eukaryota |
Metazoa, Chordata | The PDZ domain-containing SNX27 protein (541 aas; 0 TMSs) as well as the ANKRD50 protein of Homo sapiens |
9.A.3.1.2 | The multicomponent Retriever-CCC-WASH Complex (the Commander complex; formerly called the PDZ domain-containing SNX31-retromer assembly apparatus). The CCC and WASH complexes appear to function in recruitment to the endosomes. Direct cargo binding may be mediated by the COMMDs (McNally and Cullen 2018). The structure of the membrane-assembled retromer coat has been determined by cryo-electron tomography (Kovtun et al. 2018) (see family description). These two complexes and their functions have been reviewed (Chen et al. 2019). Rowlands and Moore 2024 discuss the mechanisms implicated in VPS35-mediated neurodegeneration in Parksenson's Disease, PD,, as well as the interplay between VPS35 and other PD-linked gene products. The Commander complex is required for endosomal recycling of diverse transmembrane cargos and is mutated in Ritscher-Schinzel syndrome. It comprises two sub-assemblies: Retriever composed of VPS35L, VPS26C, and VPS29; and the CCC complex which contains twelve subunits: COMMD1-COMMD10 and the coiled-coil domain-containing (CCDC) proteins CCDC22 and CCDC93.Healy et al. 2023 have assembled a complete structural model of Commander. Retriever is distantly related to the endosomal Retromer complex but has unique features preventing the shared VPS29 subunit from interacting with Retromer-associated factors. The COMMD proteins form a distinctive hetero-decameric ring stabilized by extensive interactions with CCDC22 and CCDC93. These adopt a coiled-coil structure that connects the CCC and Retriever assemblies and recruits a 16th subunit, DENND10, to form the complete Commander complex. The structure allows mapping of disease-causing mutations and reveals the molecular features required for the function of this evolutionarily conserved trafficking machinery (Healy et al. 2023). The vacuolar protein sorting 35 ortholog (VPS35) gene encodes a core component of the retromer complex essential for the endosomal sorting and recycling of transmembrane cargo. Endo-lysosomal pathway deficits are suggested to play a role in the pathogenesis of neurodegenerative diseases, including Parkinson's disease (PD). Mutations in VPS35 cause a late-onset, autosomal dominant form of PD, with a single missense mutation (D620N) shown to segregate with disease in PD families (Rowlands and Moore 2024). | Eukaryota |
Metazoa, Chordata | The Retriever Complex, including the Retriever, CCC and WASH Complexes (formerly the SNX31-retromer assembly apparatus) of Homo sapiens. The Retriever Complex VPS26C (DSCR3; 249 aas; A8MTY9) VPS35L (C16orf62; 712 aas; H3BV68) VPS29 (DC7, DC15; 182 aas; Q9UBQ0) The CCC Complex SNX31 (Strumpelin; WASHC4; KIAA0196; 440 aas; Q8N9S9) CCDC22 (627 aas; O60826) CCDC93 (631 aas; Q567U6) COMMD1-10 The WASH Complex WASH (WASHC1;469 aas; A8K0Z3) WASHC2A/B (FAM21A/B,; 1341 aas; Q641Q2) WASHC2C (FAM21C; 1318 aas; Q9Y4E1) WASHC3 (CCDC53; 194 aas; Q9Y3C0) WASHC4 (SWIP; KIAA1033; 1173 aas; Q2M389) |