1.B.66 The Putative Beta-Barrel Porin-2 (BBP2) Family
The BBP2 family is a large family of Gram-negative bacterial proteins with a single N-terminal TMS, probably a signal peptide, and predicted to consist of beta-barrels using the BOMP program. These proteins are members of the DUF1597 family and are derived from several Gram-negative bacterial phyla. Several are annotated as 'putative porin' or 'outer membrane protein'. None seems to have been characterized. These proteins belong to the large superfamily of beta barrel porins.
References:
Putative outer membrane beta-barrel porin of 447 aas.
Planctomycetes
Porin of Rhodopirellula baltica
Outer membrane protein of 404 aas. TC BLAST give a score of e-5 with 1.B.71.1.6 and 0.003 with 1.B.1.1.15, suggesting that all three familes are members of Porin Superfamily I. This suggestion has been confirmed. The protein transports glucose and is induced by low glucose concentrations in the medium (Wang et al. 2019).
Bacteroidetes
OM Porin of Cytophaga hutchinsonii
Putative porin of 371 aas. TC BLAST give a score of 0.002 with 1.B.12.5.2 and hits four repeats.
Proteobacteria
Porin of Thiomonas sp. 3As
Outer membrane protein of 530 aas. TC BLAST gives a scroe of 0.004 with 1.B.16.1.3.
Spirochaetes
OMP of Leptospira sp. B5-022
Putative porin of 367 aas.
Proteobacteria
Porin of Myxococcus xanthus
Putative porin
Planctomycetes
Porin of Candidatus Kuenenia stuttgartiensis
Putative porin
Spirochaetes
Putative porin of Leptospira biflexa
Putative porin of 359 aas
Verrucomicrobia
PP of Coraliomargarita akajimensis
Putative porin of 524 aas (DUF3138 family)
Proteobacteria
PP of Burkholderia pseudomallei
Putative porin of 413 aas
Lentisphaerae
Putative porin of Lentisphaera araneosa
Putative porin of 474 aas
Proteobacteria
Porin of Desulfocapsa sulfexigens
Putative porin of 428 aas
Proteobacteria
Porin of Hahella chejuensis
Putative porin
Proteobacteria
PP of Oligotropha carboxidovorans
Putative porin (DUF2320 family)
Proteobacteria
PP of Agrobacterium vitis
Putative porin of 405 aas; OMP protective antigen OMA87
Proteobacteria
OMP87 of Thioflavicoccus mobilis
Putative porin of 511 aas; DUF2320 family.
Proteobacteria
PP of Thiobacillus denitrificans