1.E.34 The Putative Actinobacterial Holin-X (Hol-X) Family

The Hol-X family was retrieved as a distant member of TC family 1.E.20.  The functions of its members are not known. 



This family belongs to the Holin III Superfamily .

 

References:

Nabhani, A., L. Rushing, H. Newkirk, B. Burrowes, R. Young, and C. Gonzalez. (2021). Complete Genome Sequence of Rhizobium phaseoli Podophage Palo. Microbiol Resour Announc 10:.

Examples:

TC#NameOrganismal TypeExample
1.E.34.1.1

Putative holin

Actinobacteria

Putative holin of Nocardia cyriacigeorgica

 
1.E.34.1.10

Uncharacterized protein of 126 aas and 2 TMSs

Proteobacteria

UP of Novosphingobium pentaromativorans

 
1.E.34.1.11

Uncharacterized protein of 134 aas and 2 TMSs.

UP of Methanocella arvoryzae

 
1.E.34.1.12

Uncharacterized protein of 123 aas and 2 TMSs.

UP of Methanomicrobiales archaeon

 
1.E.34.1.13

Phage holin family protein of 149 aas and 2 TM

Holin of Microlunatus phosphovorus

 
1.E.34.1.14

Phage holin family protein of 150 aas and 2 TM

Holin of Chloroflexi bacterium

 
1.E.34.1.15

Phage holin family protein of 138 aas and 2 TMSs (Nabhani et al. 2021).

Holin of Rhizobium phaseoli Palo, a T7-like podophage of Rhizobium phaseoli

 
1.E.34.1.2

Putative holin

Actinobacteria

Putative holin of Saccharomonospora viridis

 
1.E.34.1.3

Putative holin (DUF1469 family)

Actinobacteria

Putative holin of Gordonia otitidis

 
1.E.34.1.4

Putative holin

Actinobacteria

Putative holin of Intrasporangium calvum

 
1.E.34.1.5

Uncharacterized protein of 170 aas and 2 TMSs

Actinobacteria

UP of Saccharopolyspora erythraea

 
1.E.34.1.6

Uncharacterized protein of 156 aas and 2 TMSs

Actinobacteria

UP of Stackebrandtia nassauensis

 
1.E.34.1.7

Uncharacterized protein of 133 aas and 2 TMSs

Proteobacteria

UP of Rhodobacter sphaeroides

 
1.E.34.1.8

DUF1469 protein of 307 aas and 2 TMSs.  The DUF1469 domain is residues 30 - 150 where the two TMSs are.

Actinobacteria

DUF1469 domain protein of Micrococcus luteus (Micrococcus lysodeikticus)

 
1.E.34.1.9

Uncharacterized protein of 199 aas and 2 TMSs

Deinococcus/Thermus

UP of Deinococcus maricopensis

 
Examples:

TC#NameOrganismal TypeExample
1.E.34.2.1

YqjE (DUF1469) of 134 aas and 2 TMSs. 

Proteobacteria

YqjE of E coli

 
1.E.34.2.2

Uncharacterized protein of 127 aas and 2 TMSs.

Proteobacteria

UP of Gallionella capsiferriformans (Gallionella ferruginea capsiferriformans)

 
1.E.34.2.3

Uncharacterized protein of 119 aas and 2 TMSs

Proteobacteria

UP of Oxalobacter formigenes

 
1.E.34.2.4

Uncharacterized protein of 131 aas and 2 TMSs

Proteobacteria

UP of Thiomonas intermedia (Thiobacillus intermedius)

 
1.E.34.2.5

Phage holin family protein of 129 aas and 2 TMSs.

Holin of Desulfovibrio sp. X2

 
Examples:

TC#NameOrganismal TypeExample
1.E.34.3.1

Uncharacterized DUF1469 protein of 128 aas and 2 TMSs.

Cyanobacteria

UP of Prochlorococcus marinus

 
Examples:

TC#NameOrganismal TypeExample
1.E.34.4.1

Uncharacterized protein of 125 aas and 2 TMSs

Bacteroidetes

UP of Porphyromonas gingivalis

 
1.E.34.4.2

Uncharacterized protein of 116 aas and 2 TMSs

Bacteroidetes

UP of Prevotella marshii

 
1.E.34.4.3

Uncharacterized protein of 113 aas and 2 TMSs

Bacteroidetes

UP of Belliella baltica