1.E.56 The Putative 3 TMS Holin (3-Hol) Family

The 3-Hol family is large with thousands of members, all of small size and usually with 3 TMSs.  Many family members are annotated as holins.  They derive from proteobacteria and their phage.


 

References:

Roszniowski, B., A. Latka, B. Maciejewska, D. Vandenheuvel, T. Olszak, Y. Briers, G.S. Holt, M.A. Valvano, R. Lavigne, D.L. Smith, and Z. Drulis-Kawa. (2016). The temperate Burkholderia phage AP3 of the Peduovirinae shows efficient antimicrobial activity against B. cenocepacia of the IIIA lineage. Appl. Microbiol. Biotechnol. [Epub: Ahead of Print]

Examples:

TC#NameOrganismal TypeExample
1.E.56.1.1

Putative holin (DUF745 protein) of 102 aas and 3 TMSs.

Proteobacterial virus

Holin of Salmonella phage SPN1S

 
1.E.56.1.10

Putative holin of 92 aas and 3 TMSs

Proteobacteria

Putative holin of Pseudomonas poae

 
1.E.56.1.11

Putative holin of 85 aas and 3 TMSs

Proteobacteria

Putative holin of Acinetobacter baumannii

 
1.E.56.1.12

Class I holin of 105 aas and 3 TMSs

Proteobacterial viru

Class 1 hoin of Pseudomonas phage AF

 
1.E.56.1.2

Holin of 106 aas and 3 TMSs.  Similar to the holins of phage KS5 and AP3 which have been used to combat infection by  B. cenocepacia in a Galleria mellonella moth wax model. AP3 treatment of larvae infected with B. cenocepacia revealed an increase (P < 0.0001) in larval survival (Roszniowski et al. 2016).

Proteobacteria

Holin of Burkholderia cenocepacia

 
1.E.56.1.3

Putative holin of 93 aas and 3 TMSs

Proteobacterial virus

Holin of Enterobacterial phge mEp390

 
1.E.56.1.4

Uncharacterized protein of 93 aas and 3 TMSs

Proteobacteria

UP of Klebsiella variicola

 
1.E.56.1.5

Putative holin of 91 aas and 3 TMSs

Proteobacterial viru

Enterbacterial phage PhiP27

 
1.E.56.1.6

Putative holin of 93 aas and 3 TMSs

Proteobacteria

Putative holin of E. coli

 
1.E.56.1.7

Putative holin of 94 aas and 3 TMSs

Proteobacterial viru

Putative holin of Pseudomonas phage Phi297

 
1.E.56.1.8

Putative holin of 94 aas and 3 TMSs

Proteobacteria

Putative holin of Laribacter hongkongensis

 
1.E.56.1.9

Putative holin, gp28, of 88 aas and 3 TMSs

Proteobacterial viru

gp28 of Burkholderia phage KS14