Calculation of Protein Properties
- Hydropathy Analysis - Hydropathy analysis using the Kyte-Doolittle scale combined with hydrophobic moment and TMS prediction.
- EMBOSS Pepwindow - EMBOSS Hydropathy Analysis
- EMBOSS Hmoment - EMBOSS Hmoment calculates the hydrophobic moment, the hydrophobicity of a peptide measured for a specified angle of rotation per residue.
- EMBOSS Pepwheel - creates a helical wheel plot that displays a protein sequence looking down the axis of the alpha helix. This view facilitates the identification of amphipathic TMSs.
- Helixator - creates a helical wheel plot that displays a protein sequence looking down the axis of the alpha helix. This view facilitates the identification of amphipathic TMSs.
- HMMTOP
- Highlight TMS regions in a protein as predicted by HMMTOP
- TMSTATS - Statistical analysis of topological data within any TC hierarchy, domain, or phyla
- Length Statistics - Statistical analysis of protein lengths within any TC hierarchy, domain, or phyla
Sequence Similarity Search
- BLAST - Search against TC-DB with a protein or nucleotide sequence.
- PSIBLAST - Search TC-DB for distant homologs
Pairwise Sequence Alignment
Multiple Sequence Alignment Tools and Accessories
Other Sequence Analysis Tools