1.B.25.1.8
Anion-selective OpdK (OccK1 or OpdK) benzoate/vanillate-selective porin (Tamber et al., 2006; Eren et al., 2012; Liu et al. 2012). The structure of the OpdK porin, specific for vanillate and related small aromatic acids, has been solved by x-ray crystallography (3SYS_A). It is a labile trimer with monomers of an 18 β-stranded barrel and with an inner diameter of 8Å (Biswas et al., 2008). Other substrates transported (but less well) include 4-nitrobenzoate, caproate, octanoate, carbenicillin, cefoxitin, tetracycline antibiotics, and carbapenem antibioitics (imipenem and meropenem) (Eren et al., 2012). Molecular dynamic simulations and mutant analyses have been reported (Wang et al. 2012).
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Accession Number: | Q9HUR5 |
Protein Name: | OpdK aka PA4898 |
Length: | 417 |
Molecular Weight: | 45778.00 |
Species: | Pseudomonas aeruginosa [287] |
Number of TMSs: | 1 |
Location1 / Topology2 / Orientation3: |
Cell membrane1 / Multi-pass membrane protein2 |
Substrate |
anion, tetracycline, octanoate, carbenicillin, methyl vanillate, 4-nitrobenzoic acid, 2-(Biaryl)carbapenems, hexanoate, benzoate |
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1: MKIRRKTAVP RNAGAVLPML ACLAAQAAEG GFLEDAKTDL VLRNYYFNRD FRDHDAGKSL
61: VDEWAQGFIL KFSSGYTPGT VGVGLDAIGL FGVKLNSGRG TSNSELLPLH DDGRAADNYG
121: RVGVAAKLRV SASELKIGEM LPDIPLLRYD DGRLLPQTFR GFAVVSRELP GLALQAGRFD
181: AVSLRNSADM QDLSAWSAPT QKSDGFNYAG AEYRFNRERT QLGLWHGQLE DVYRQSYANL
241: LHKQRVGDWT LGANLGLFVD RDDGAARAGE IDSHTVYGLF SAGIGLHTFY LGLQKVGGDS
301: GWQSVYGSSG RSMGNDMFNG NFTNADERSW QVRYDYDFVG LGWPGLIGMV RYGHGSNATT
361: KAGSGGKEWE RDVELGYTVQ SGPLARLNVR LNHASNRRSF NSDFDQTRLV VSYPLSW