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9.A.34 The Nuclear Pore Complex Biogenesis (NPC-B) Family 

Three proteins have been implicated in nuclear export in yeast.  These proteins are the Brl1 protein, a nuclear export system protein (Saitoh et al. 2005), the Brr6 protein of a similar function (de Bruyn Kops and Guthrie 2001), and Apq12 which forms a complex with Brl1 and Brr6 (Lone et al. 2015).  They collectively seem to function in lipid homeostasis and maintenance of the nuclear envelop.  Brr6 is reported to be required for mRNA nuclear export. It may also be involved in nuclear pore complex (NPC) distribution and nuclear envelope morphology (de Bruyn Kops and Guthrie 2001).  The transmembrane protein Brl1 is an NPC assembly factor required for nuclear envelope fusion in budding yeast. Brl1 preferentially associates with NPC assembly intermediates, and its depletion halts NPC biogenesis, leading to NE herniations that contain inner and outer ring nucleoporins but lack the cytoplasmic export platform (Kralt et al. 2022).

A protein known to localize to and be important in the assembly of both the yeast NPC and the spindle pole body, which functions as the microtubule organizing center, is the 6 TMS protein, Ndc1p (NPC1 in humans (see TC# 1.I.1). The N- and C-termini of Ndc1p are exposed to the cytoplasm (Lau et al. 2006). The paralogous Brr6 and Brl1 are conserved integral membrane proteins of the nuclear envelope (NE). Depletion of Brr6 and Brl1 caused defects in NPC biogenesis, whereas the already assembled NPCs remained unaffected. This NPC biogenesis defect was not accompanied by a change in lipid composition, but Brl1 interacted with Ndc1 and Nup188 as well as transmembrane and outer and inner ring NPC components, indicating a direct role in NPC biogenesis.Both Brr6 and Brl1 associate with a subpopulation of NPCs and emerging NPC assembly sites. BRL1 overexpression affected NE morphology and suppressed the nuclear pore biogenesis defects of Δnup116 and Δgle2 cells. Possibly Brr6 and Brl1 transiently associate with NPC assembly sites where they promote NPC biogenesis (Zhang et al. 2018).

BRR6 and BRL1 are two paralogs that encode transmembrane proteins of the nuclear envelope (NE) involved in membrane fluidity and nuclear pore complex biogenesis in organisms that undergo closed mitosis. Gardner et al. 2021 showed that mutation of a conserved cysteine in the intralumenal domain of Saccharomyces cerevisiae Brr6p results in a novel temperature sensitive allele, brr6-Y100H, that arrests growth due to defects in spindle formation. Analysis of brr6-Y100H cells by electron tomography and Brr6p localization by super-resolution imaging supports the idea that Brr6p is involved in insertion of the newly duplicated spindle pole body into the NE (Gardner et al. 2021).


References associated with 9.A.34 family:

de Bruyn Kops, A. and C. Guthrie. (2001). An essential nuclear envelope integral membrane protein, Brr6p, required for nuclear transport. EMBO. J. 20: 4183-4193. 11483521
Gardner, J.M., E. O''Toole, and S.L. Jaspersen. (2021). A mutation in budding yeast affecting nuclear envelope insertion of the spindle pole body. MicroPubl Biol 2021:. 34549174
Kralt, A., M. Wojtynek, J.S. Fischer, A. Agote-Aran, R. Mancini, E. Dultz, E. Noor, F. Uliana, M. Tatarek-Nossol, W. Antonin, E. Onischenko, O. Medalia, and K. Weis. (2022). An amphipathic helix in Brl1 is required for nuclear pore complex biogenesis in. Elife 11:. 36000978
Lone MA., Atkinson AE., Hodge CA., Cottier S., Martinez-Montanes F., Maithel S., Mene-Saffrane L., Cole CN. and Schneiter R. (2015). Yeast Integral Membrane Proteins Apq12, Brl1, and Brr6 Form a Complex Important for Regulation of Membrane Homeostasis and Nuclear Pore Complex Biogenesis. Eukaryot Cell. 14(12):1217-27. 26432634
Saitoh, Y.H., K. Ogawa, and T. Nishimoto. (2005). Brl1p -- a novel nuclear envelope protein required for nuclear transport. Traffic 6: 502-517. 15882446