TCDB is operated by the Saier Lab Bioinformatics Group

9.C.27.  The Nucleic Acid Transmembrane Transporter (NATT) Families

Transmembrane transport of nucleic acids is a key process in cells, which facilitates cell division, gene expression, and even intercellular communication by exchange of genetic information between cells (Li and Schulman 2019). However, the structural features of nucleic acids, including biodegradability, negative charges, and hydrophilic backbones, prevent free diffusion across the cell membranes. (Dowdy 2017).  In fact, it is of biomedical importance to effectively deliver RNA therapeutic agents across cell membranes to exert their intracellular functions. Thanks to the biocompatibility, low immunogenicity, and therapeutic function of nucleic acids (Winkle et al. 2021), several typical delivery techniques based on RNA therapy have been developed to assist in nucleic acid transmembrane transport, such as lipid nanoparticles (LNP) (Mitchell et al. 2021), and polymer‐based nanoparticles (Duncan 2003), viral or bacterial agents (Lundstrom K., Vaccines 2020, 9, 1187), and membrane‐penetrating peptides (Furukawa et al. 2020). In addition, inspired by the way that natural channels transport ions, only a few nucleic acid and protein transport models based on membrane‐spanning nanopores have been reported (Thomsen et al. 2019). Finally, single-stranded nucleic acid transmembrane molecular carriers based on positively charged helical foldamers have been developed (Ge et al. 2024).  None of these systems are natural carriers, and therefore, no amino acid sequences are available for them.

References associated with 9.C.27 family:

Dowdy, S.F. (2017). Overcoming cellular barriers for RNA therapeutics. Nat Biotechnol 35: 222-229. 28244992
Duncan, R. (2003). The dawning era of polymer therapeutics. Nat Rev Drug Discov 2: 347-360. 12750738
Furukawa, K., M. Tanaka, and M. Oba. (2020). siRNA delivery using amphipathic cell-penetrating peptides into human hepatoma cells. Bioorg Med Chem 28: 115402. 32146061
Ge, Y., W. Li, J. Tian, H. Yu, Z. Wang, M. Wang, and Z. Dong. (2024). Single-Stranded Nucleic Acid Transmembrane Molecular Carriers Based on Positively Charged Helical Foldamers. Adv Sci (Weinh) 11: e2400678. 38757406
Li, Y. and R. Schulman. (2019). Talking across the membrane. Nat Chem 11: 18-20. 30552429
Mitchell, M.J., M.M. Billingsley, R.M. Haley, M.E. Wechsler, N.A. Peppas, and R. Langer. (2021). Engineering precision nanoparticles for drug delivery. Nat Rev Drug Discov 20: 101-124. 33277608
Thomsen, R.P., M.G. Malle, A.H. Okholm, S. Krishnan, S.S. Bohr, R.S. Sørensen, O. Ries, S. Vogel, F.C. Simmel, N.S. Hatzakis, and J. Kjems. (2019). A large size-selective DNA nanopore with sensing applications. Nat Commun 10: 5655. 31827087
Winkle, M., S.M. El-Daly, M. Fabbri, and G.A. Calin. (2021). Noncoding RNA therapeutics - challenges and potential solutions. Nat Rev Drug Discov 20: 629-651. 34145432