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1.A.10.3.2
Ligand-gated ion channel of 448 aas and 4 TMSs in a 3 + 1 TMS arrangement.

Accession Number:YP_009325584.1
Protein Name:YP_009325584.1 Ligand-gated ion channel [Only Syngen Nebraska virus 5]
Length:449
Molecular Weight:
Species:Only Syngen Nebraska virus 5 [1917232]
Number of TMSs:3
Substrate

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MSEICFADYV YPSSCGTKRW EIVNILMDAY KEYTNQEPKF RCTPSDITFE VDIATGRAFN 
61:	CSVIVGHEVS TYARVVRFNN YTIGSAYNHS YALVTPVQDT PYDPTDSNGW EFLNPFTLPV 
121:	WLLFLGVVLF AFIIQFAMRK YEIDVSTSSL NERCAETLSR SILSAIGSLK LYASENRKIV 
181:	RQLMSCCMAL FSVFIMSLYS SNLINFFYYQ SVPSAFGTTS SQHITVHPAY KNVISYEDLG 
241:	VYKGSSQDFT SSFMIPYGIY QTDTIPVIPN TWGGNLINST TRLVMVGYYK SAYQLLFTQL 
301:	ATPQFIVFVN NYVEKRINEY NTITTISADT NLNEHQSLPA PVLTLHNTWG IFVILLAGYI 
361:	LSLIFRITWT KKTGLGKLVF FNREDILDFF MAEKCSSIRD NSSIPSPQTN TGTRVSDKTS 
421:	ATKKKGDKTS ATKDSYMSKS PGFMELNV